YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948554, gi...
Organism:	synthetic construct
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948554, gi....

Description	E-value	Query Range	Subject Range
PET117 - Protein required for assembly of cytochrome c oxidase PT117_YEAST - Protein PET117, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PET117 PE=...	138.0	[0..1]	[106..1]
gi\|38104379, gi\|... - gi\|39945466\|ref\|XP_362270.1\| hypothetical protein MGG_04715 [Magnaporthe grisea 70-15], gb\|EAA50956....	126.0	[0..1]	[86..1]
gi\|85083347 - gi\|85083347\|ref\|XP_957105.1\| hypothetical protein NCU05119 [Neurospora crassa OR74A] gi\|32407976, gi\|... - gi\|32407976\|ref\|XP_324476.1\| predicted protein [Neurospora crassa], gi\|28918190\|gb\|EAA27869.1\| predi...	117.0	[0..1]	[83..1]
gi\|49527142 - gi\|49527142\|emb\|CAG60780.1\| unnamed protein product [Candida glabrata] gi\|49527142, gi\|... - gi\|50290797\|ref\|XP_447831.1\| unnamed protein product [Candida glabrata], gi\|49527142\|emb\|CAG60780.1\|...	104.0	[0..1]	[106..32]
gi\|44982558, gi\|... - gi\|45187797\|ref\|NP_984020.1\| ADL076Wp [Ashbya gossypii ATCC 10895], gi\|44982558\|gb\|AAS51844.1\| ADL07... gi\|44982558 - gi\|44982558\|gb\|AAS51844.1\| ADL076Wp [Ashbya gossypii ATCC 10895]	103.0	[0..1]	[106..14]
gi\|49641703 - gi\|49641703\|emb\|CAH01421.1\| KLLA0C08327p [Kluyveromyces lactis] gi\|49641703, gi\|... - gi\|50305223\|ref\|XP_452570.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641703\|emb\|CAH0142...	101.0	[0..1]	[106..1]
gi\|109093011 - gi\|109093011\|ref\|XP_001089476.1\| PREDICTED: hypothetical protein [Macaca mulatta]	94.0	[0..1]	[68..1]
gi\|37182454 - gi\|37182454\|gb\|AAQ89029.1\| CSRP2BP [Homo sapiens]	92.0	[0..1]	[68..1]
gi\|42547096, gi\|... - gi\|46111557\|ref\|XP_382836.1\| hypothetical protein FG02660.1 [Gibberella zeae PH-1], gi\|42547096\|gb\|E...	90.0	[0..1]	[84..1]
gi\|54645785, gi\|... - gi\|54645785\|gb\|EAL34523.1\| GA11067-PA [Drosophila pseudoobscura], gi\|125987383\|ref\|XP_001357454.1\| G...	89.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASRVTLG LAVSISTAII GYVHYKQSAD RLRLHDGVLR DVEQQQRRKH ENTYTLQQQI  60
   61 DMTKQLKARE ASSNSSDTPV PPSTHRAQSN LQAEKPAVQN EGEAFRGVPQ GGTTNHDGSP 120
  121 PTDIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits