YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220948254, gi...
Organism:	synthetic construct
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220948254, gi....

Description	E-value	Query Range	Subject Range
gi\|76637598 - gi\|76637598\|ref\|XP_609109.2\| PREDICTED: similar to RER1 homolog [Bos taurus]	316.0	[0..5]	[193..99]
gi\|7688699 - gi\|7688699\|gb\|AAF67490.1\|AF157324_1 RER1 protein [Homo sapiens]	313.0	[0..5]	[195..9]
gi\|47220416 - gi\|47220416\|emb\|CAG03196.1\| unnamed protein product [Tetraodon nigroviridis]	307.0	[0..5]	[193..9]
RER1_PONPY - Protein RER1 - Pongo pygmaeus (Orangutan) gi\|108995760, gi... - gi\|108995760\|ref\|XP_001084959.1\| PREDICTED: RER1 retention in endoplasmic reticulum 1 homolog (S. ce... RER1 - RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) gi\|60655621 - gi\|60655621\|gb\|AAX32374.1\| RER1-like [synthetic construct] RER1_PONAB - Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1	303.0	[0..5]	[193..9]
gi\|30585315, gi\|... - gi\|61373046\|gb\|AAX43964.1\| RER1-like [synthetic construct], gi\|61373041\|gb\|AAX43963.1\| RER1-like [sy...	303.0	[0..5]	[193..9]
RER1_MOUSE - Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 RER1_RAT - Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1	302.0	[0..5]	[193..9]
gi\|54639039\|gb\|E... - GA11240-PA [Drosophila pseudoobscura], GA11240 [Drosophila pseudoobscura pseudoobscura] gi\|195152317, gi... - gi\|195152317\|ref\|XP_002017083.1\| GL21709 [Drosophila persimilis], gi\|194112140\|gb\|EDW34183.1\| GL2170... gi\|54639039, gi\|... - gi\|54639039\|gb\|EAL28441.1\| GA11240 [Drosophila pseudoobscura pseudoobscura], gi\|125776503\|ref\|XP_001...	302.0	[0..1]	[203..1]
RER1_CHICK - Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1	299.0	[0..5]	[193..9]
gi\|37194662, gi\|... - gi\|41053411\|ref\|NP_956969.1\| RER1 retention in endoplasmic reticulum 1 homolog [Danio rerio], gi\|376...	297.0	[0..5]	[193..9]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNEDSSAAG GGGVKKFFQR LSQTYQSALD RSTPHTRMRW VFAGFLLLLF VLRIFIYQGW  60
   61 YIVCYALGIY HLNLFIAFLT PKIDPEFDPY SQDDEDEGPN LPTRSNEEFR PFIRRLPEFK 120
  121 FWLSVAKSTL IGLICTFFDF FNVPVFWPIL VMYFITLFCI TMKRQIKHMI KYKYLPFTRN 180
  181 KPRYQRVNDL AGSGPGSVAG NSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	146.055517
Match:	PF03248.4
Description:	No description for PF03248.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits