YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220959306, gi...
Organism:	synthetic construct
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220959306, gi....

Description	E-value	Query Range	Subject Range
gi\|54642569, gi\|... - gi\|54642569\|gb\|EAL31316.1\| GA15071 [Drosophila pseudoobscura pseudoobscura], gi\|125980478\|ref\|XP_001... gi\|195167751, gi... - gi\|195167751\|ref\|XP_002024696.1\| GL22482 [Drosophila persimilis], gi\|194108101\|gb\|EDW30144.1\| GL2248... gi\|125980478\|ref... - GA15071-PA [Drosophila pseudoobscura], GA15071 [Drosophila pseudoobscura pseudoobscura]	140.0	[0..1]	[128..1]
gi\|58387994, gi\|... - gi\|58387994\|ref\|XP_315957.2\| ENSANGP00000014147 [Anopheles gambiae str. PEST], gi\|55238739\|gb\|EAA116...	135.0	[0..10]	[128..9]
gi\|108874294, gi... - gi\|157123746\|ref\|XP_001653874.1\| mitochondrial ribosomal protein, L36, putative [Aedes aegypti], gi\|...	107.0	[0..26]	[128..34]
RTC6 - Homolog of the prokaryotic ribosomal protein L36, likely to be a mitochondrial ribosomal protein cod... RTC6_YEAST - 54S ribosomal protein RTC6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	106.0	[0..32]	[107..18]
RM36_MOUSE - 39S ribosomal protein L36, mitochondrial OS=Mus musculus GN=Mrpl36 PE=3 SV=1	106.0	[0..25]	[107..19]
RM36_RAT - 39S ribosomal protein L36, mitochondrial OS=Rattus norvegicus GN=Mrpl36 PE=3 SV=1	104.0	[0..26]	[107..16]
MRPL36 - mitochondrial ribosomal protein L36 ENSPTRT00000031035 - null	102.0	[0..25]	[107..15]
gi\|145019720, gi... - gi\|39971819\|ref\|XP_367300.1\| hypothetical protein MGG_07225 [Magnaporthe grisea 70-15], gb\|EAA56870.... gi\|59803152 - gi\|59803152\|gb\|AAX07726.1\| unknown [Magnaporthe grisea]	101.0	[0..12]	[106..20]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLASRILQQ GSRLWNGLSA ARGFHLLTRP AAPAIVSIQS SQLVAATTGI CQTSGLLTPG  60
   61 STLVQQVAGF KVKGRLKRRC KDCYIVVRQE RGYVICPTHP RHKQMSMKKR DYKSWILTHA 120
  121 TQSKERGY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits