YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205272813, gi...
Organism:	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205272813, gi....

Description	E-value	Query Range	Subject Range
gi\|75209213, gi\|... - gi\|75209213\|ref\|ZP_00709460.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..368]	[1..368]
gi\|89105578 - gi\|89105578\|ref\|ZP_01178095.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[3..367]	[34..398]
gi\|238720208, gi... - gi\|77963649\|ref\|ZP_00827457.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[3..367]	[4..368]
gi\|77635911 - gi\|77635911\|ref\|ZP_00797990.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[3..367]	[24..388]
gi\|77629499, gi\|... - gi\|77629499\|ref\|ZP_00792085.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[3..368]	[24..389]
gi\|238789081, gi... - gi\|77972866\|ref\|ZP_00828422.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[3..367]	[4..368]
gi\|45436440, gi\|... - gi\|45441579\|ref\|NP_993118.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia ... gi\|22125693, gi\|... - gi\|22125693\|ref\|NP_669116.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia ... gi\|115347385, gi... - gi\|218928774\|ref\|YP_002346649.1\| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92], gi\|16121... gi\|149366398, gi... - gi\|149366398\|ref\|ZP_01888432.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167470788 - gi\|167470788\|ref\|ZP_02335492.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPS - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=mnm... MNMA_YERPP - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis (strain Pestoides F) GN=mnmA PE=3 SV=1 gi\|166211105, gi... - gi\|166211105\|ref\|ZP_02237140.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|229694088, gi... - gi\|229841625\|ref\|ZP_04461783.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167048808, gi... - gi\|167401703\|ref\|ZP_02307194.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|229843742, gi... - gi\|229843742\|ref\|ZP_04463885.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167421866, gi... - gi\|167421866\|ref\|ZP_02313619.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167054667, gi... - gi\|167426312\|ref\|ZP_02318065.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPA - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mnmA PE=3 SV=1 MNMA_YERPN - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mnmA PE=3 SV=... gi\|165925423, gi... - gi\|165925423\|ref\|ZP_02221255.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPE - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis GN=mnmA PE=3 SV=1 gi\|165938528, gi... - gi\|165938528\|ref\|ZP_02227085.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|229703505, gi... - gi\|229894486\|ref\|ZP_04509668.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPY - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mnm... gi\|166008070, gi... - gi\|166008070\|ref\|ZP_02228968.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPG - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mnmA PE=3 SV=1 MNMA_YERPB - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mnmA... TRMU_YERPS, MNMA... - tRNA - Yersinia pseudotuberculosis, tRNA-specific 2-thiouridylase mnmA OS=Yersinia pseudotuberculosi...	0.0	[3..367]	[4..368]
gi\|62127388, gi\|... - gi\|62179755\|ref\|YP_216172.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonell...	0.0	[1..368]	[16..383]
gi\|238791830, gi... - gi\|77980028\|ref\|ZP_00835443.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[3..367]	[4..368]
MNMA_SALCH, TRMU... - tRNA - Salmonella choleraesuis, tRNA-specific 2-thiouridylase mnmA OS=Salmonella choleraesuis GN=mnm... MNMA_SALCH - tRNA-specific 2-thiouridylase MnmA OS=Salmonella choleraesuis (strain SC-B67) GN=mnmA PE=3 SV=2 MNMA_SALCH - tRNA-specific 2-thiouridylase mnmA OS=Salmonella choleraesuis GN=mnmA PE=3 SV=2	0.0	[1..368]	[1..368]

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Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESPKKVIV GMSGGVDSSV SAWLLQQQGY QVEGLFMKNW EEDDGEEYCT AAADLADAQA  60
   61 VCDKLGIELH TVNFAAEYWD NVFELFLEEY KAGRTPNPDI LCNKEIKFKA FLEFAAEDLG 120
  121 ADYIATGHYV RRADVNGKSR LLRGLDGNKD QSYFLYTLGH EQIAQSLFPV GELEKPQVRK 180
  181 IAEDLGLVTA KKKDSTGICF IGERKFRDFL GRYLPAQPGK IITVDGDEIG EHQGLMYHTL 240
  241 GQRKGLGIGG TKDGSEDPWY VVDKDVENNV LIVAQGHEHP RLMSVGLIAQ QLHWVDREPF 300
  301 TGTLRCTVKT RYRQTDIPCT INALDDDRIE VIFDEPVAAV TPGQSAVFYS GEVCLGGGII 360
  361 EQRLPLTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	2derA
Description:	No description for 2derA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits