YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213616355
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213616355.

Description	E-value	Query Range	Subject Range
TSAD_ECO81 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O81 (strain ED1a) GN=tsaD PE=3 SV... TSAD_ECO45 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ts... TSAD_ECOL6 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70092... TSAD_ECOUT - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=tsaD PE=... TSAD_ECOL5 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN... TSAD_ECOK1 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O1:K1 / APEC GN=tsaD PE=3 SV=1 GCP_ECOL6 - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Escherichia coli O6 GN=gcp PE=3... gi\|75240475 - gi\|75240475\|ref\|ZP_00724403.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|227835183, gi... - gi\|227887787\|ref\|ZP_04005592.1\| O-sialoglycoprotein endopeptidase [Escherichia coli 83972], gi\|22783... gi\|226899214, gi... - gi\|237706174\|ref\|ZP_04536655.1\| O-sialoglycoprotein endopeptidase [Escherichia sp. 3_2_53FAA], gi\|22...	0.0	[1..337]	[1..337]
gi\|75212302 - gi\|75212302\|ref\|ZP_00712326.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|191168813, gi... - gi\|75227949\|ref\|ZP_00714644.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ECO24 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) ... TSAD_ECOHS - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=tsaD PE=3 SV... gi\|188490026, gi... - gi\|75511252\|ref\|ZP_00733950.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|168754034, gi... - gi\|189358710\|gb\|EDU77129.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4401]... TSAD_SHISS - tRNA N6-adenosine threonylcarbamoyltransferase OS=Shigella sonnei (strain Ss046) GN=tsaD PE=3 SV=1 gi\|168769472, gi... - gi\|189361391\|gb\|EDU79810.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4486]... gi\|192959444, gi... - gi\|75239365\|ref\|ZP_00723336.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|187770918, gi... - gi\|187770918\|gb\|EDU34762.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4196]... gi\|75259997, gi\|... - gi\|75259997\|ref\|ZP_00731275.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|189373919, gi... - gi\|189373919\|gb\|EDU92335.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC869],... TSAD_ECOLC - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Cr... TSAD_SHIB3 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / ... TSAD_ESCF3 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13... TSAD_ECO8A - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O8 (strain IAI1) GN=tsaD PE=3 SV=... TSAD_ECO55 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=tsaD PE=... gi\|209759262, gi... - gi\|209759266\|gb\|ACI77945.1\| putative O-sialoglycoprotein endopeptidase [Escherichia coli], gi\|209759... TSAD_ECO7I - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=t... gi\|254795015, gi... - gi\|254795015\|ref\|YP_003079852.1\| predicted peptidase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|124502129, gi... - gi\|124526025\|ref\|ZP_01698030.1\| putative metalloendopeptidase, glycoprotease family [Escherichia col... gi\|30064412, gi\|... - gi\|30064412\|ref\|NP_838583.1\| O-sialoglycoprotein endopeptidase [Shigella flexneri 2a str. 2457T], gi... gi\|189379740, gi... - gi\|189379740\|gb\|EDU98156.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC508],... gi\|194431811, gi... - gi\|194431811\|ref\|ZP_03064102.1\| O-sialoglycoprotein endopeptidase [Shigella dysenteriae 1012], gi\|19... gi\|195937209 - gi\|195937209\|ref\|ZP_03082591.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4... gi\|208726124, gi... - gi\|208806323\|ref\|ZP_03248660.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4... gi\|208734152, gi... - gi\|208812875\|ref\|ZP_03254204.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4... gi\|208819529, gi... - gi\|208819529\|ref\|ZP_03259849.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. EC4... TSAD_SHIFL - tRNA N6-adenosine threonylcarbamoyltransferase OS=Shigella flexneri GN=tsaD PE=3 SV=1 TSAD_ECO5E - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN... gi\|24114364, gi\|... - gi\|24114364\|ref\|NP_708874.1\| O-sialoglycoprotein endopeptidase [Shigella flexneri 2a str. 301], gi\|2... TSAD_ECOSE - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain SE11) GN=tsaD PE=3 SV=1 TSAD_SHIF8 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=tsa... TSAD_SHIBS - tRNA N6-adenosine threonylcarbamoyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=tsaD ...	0.0	[1..337]	[1..337]
GCP_SALPA - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Salmonella paratyphi A GN=gcp P... GCP_SALCH - Probable O-sialoglycoprotein endopeptidase OS=Salmonella choleraesuis GN=gcp PE=3 SV=1 TSAD_SALPC - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=tsaD PE... TSAD_SALPK - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=tsaD ... TSAD_SALPA - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)... gi\|194471173, gi... - gi\|194471173\|ref\|ZP_03077157.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enteri... TSAD_SALCH - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=tsaD PE... gi\|205343466, gi... - gi\|205343466\|gb\|EDZ30230.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... gi\|205333878, gi... - gi\|205333878\|gb\|EDZ20642.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... GCP_SALCH - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Salmonella choleraesuis GN=gcp ...	0.0	[1..337]	[1..337]
TSAD_PHOPR - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum (strain SS9) GN=tsaD PE=3... TSAD_PHOPR, GCP_... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum GN=tsaD PE=3 SV=1, Probab...	0.0	[1..334]	[1..334]
TSAD_SALTY - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... TSAD_SALG2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)... gi\|200387093, gi... - gi\|200387093\|ref\|ZP_03213705.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enteri... TSAD_SALDC - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella dublin (strain CT_02021853) GN=tsaD PE=... gi\|197265256, gi... - gi\|197265256\|ref\|ZP_03165330.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=gcp] [protein=O-sialoglycoprotein endopeptidase] [protein_id=YP_005239384.1] [location=complem... TSAD_SALEP - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=tsa... gi\|167990238, gi... - gi\|205331153\|gb\|EDZ17917.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... GCP_SALTY - Probable O-sialoglycoprotein endopeptidase OS=Salmonella typhimurium GN=gcp PE=3 SV=2 GCP_SALTY - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Salmonella typhimurium GN=gcp P... TSAD_SALA4 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella agona (strain SL483) GN=tsaD PE=3 SV=1 TSAD_SALHS - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella heidelberg (strain SL476) GN=tsaD PE=3 ... gi\|205348610, gi... - gi\|205348610\|gb\|EDZ35241.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... gi\|205337810, gi... - gi\|205337810\|gb\|EDZ24574.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s...	0.0	[1..337]	[1..337]
EG11171 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein / tRNA(... EG11171 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein / tRNA(... GCP_ECOLI - Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57) (Glycoprotease) - Escherichia coli TSAD_ECOBW - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN... gi\|251786341, gi... - gi\|251786341\|ref\|YP_003000645.1\| hypothetical protein B21_02884 [Escherichia coli BL21], gi\|24237861... TSAD_ECODH - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=tsaD PE=3... gi\|253323144, gi... - gi\|254289761\|ref\|YP_003055509.1\| O-sialoglycoprotein endopeptidase [Escherichia coli BL21(DE3)], gi\|... TSAD_ECOLU - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPE... gi\|226839857, gi... - gi\|254038233\|ref\|ZP_04872291.1\| peptidase [Escherichia sp. 1_1_43], gi\|226839857\|gb\|EEH71878.1\| pept... gi\|253974912, gi... - gi\|254163011\|ref\|YP_003046119.1\| O-sialoglycoprotein endopeptidase [Escherichia coli B str. REL606],... gi\|83587498 - gi\|83587498\|ref\|ZP_00926125.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_SHIDS - tRNA N6-adenosine threonylcarbamoyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=... gi\|89109834, gi\|... - gi\|89109834\|ref\|AP_003614.1\| predicted peptidase [Escherichia coli str. K-12 substr. W3110], gi\|8567...	0.0	[1..337]	[1..337]
gi\|551834, gi\|225555 - gi\|551834\|gb\|AAA72575.1\| ORF-x [Escherichia coli], gi\|225555\|prf\|\|1306285D ORF x,upsU upstream	0.0	[1..337]	[1..337]
gi\|13363420, gi\|... - gi\|15833201\|ref\|NP_311974.1\| putative DNA-binding/iron metalloprotein/AP endonuclease [Escherichia c... gi\|217327754, gi... - gi\|217327754\|ref\|ZP_03443837.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 str. TW1... TSAD_ECO57 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O157:H7 GN=tsaD PE=3 SV=1 gi\|209759260, gi... - pir\|\|B85967 probable O-sialoglycoprotein endopeptidase ygjD [imported] - Escherichia coli (strain O1... gi\|12517643, gi\|... - gi\|15803606\|ref\|NP_289639.1\| O-sialoglycoprotein endopeptidase [Escherichia coli O157:H7 EDL933], gi...	0.0	[1..337]	[1..337]
TSAD_ACTP2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strai... gi\|32035197 - gi\|32035197\|ref\|ZP_00135231.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ACTPJ - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain... TSAD_ACTP7 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain...	0.0	[1..335]	[1..340]
gi\|90327169, gi\|... - gi\|90411911\|ref\|ZP_01219919.1\| putative O-sialoglycoprotein endopeptidase [Photobacterium profundum ...	0.0	[1..334]	[1..334]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLGIETSC DETGIAIYDD KKGLLANQLY SQVKLHADYG GVVPELASRD HVRKTVPLIQ  60
   61 AALKEAALTA SDIDAVAYTA GPGLVGALLV GATVGRSLAF AWNVPAIPVH HMEGHLLAPM 120
  121 LEDNPPDFPF VALLVSGGHT QLISVTGIGQ YELLGESIDD AAGEAFDKTA KLLGLDYPGG 180
  181 PMLSKMASQG TAGRFVFPRP MTDRPGLDFS FSGLKTFAAN TIRSNGDDEQ TRADIARAFE 240
  241 DAVVDTLMIK CKRALESTGF KRLVMAGGVS ANRTLRAKLA EMMQKRRGEV FYARPEFCTD 300
  301 NGAMIAYAGM VRFKAGVTAD LGVTVRPRWP LAELPAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.09691
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits