YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213581080
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213581080.

Description	E-value	Query Range	Subject Range
DADA_SALCH - D-amino acid dehydrogenase small subunit OS=Salmonella choleraesuis GN=dadA PE=3 SV=1 DADA_SALCH - D-amino acid dehydrogenase OS=Salmonella choleraesuis (strain SC-B67) GN=dadA PE=3 SV=1 DADA_SALCH - D-amino acid dehydrogenase small subunit OS=Salmonella choleraesuis GN=dadA PE=3 SV=1	2.0E-75	[1..432]	[1..432]
lcl\|NC_016856.1_... - [gene=dadA] [protein=D-amino acid dehydrogenase small subunit] [protein_id=YP_005237738.1] [location... DADA_SALTY - D-amino acid dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dadA P... DADA_SALEP - D-amino acid dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=dadA PE=3 SV=1 DADA_SALDC - D-amino acid dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=dadA PE=3 SV=1 gi\|197263686, gi... - gi\|197263686\|ref\|ZP_03163760.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALHS - D-amino acid dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=dadA PE=3 SV=1 gi\|167554126, gi... - gi\|205321611\|gb\|EDZ09450.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALNS - D-amino acid dehydrogenase OS=Salmonella newport (strain SL254) GN=dadA PE=3 SV=1 gi\|168462708, gi... - gi\|195634104\|gb\|EDX52456.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPB - D-amino acid dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dadA PE=3 SV=1 gi\|168241391, gi... - gi\|205339629\|gb\|EDZ26393.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|167993252, gi... - gi\|205328690\|gb\|EDZ15454.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPB - D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=... DADA_SALTY - D-amino acid dehydrogenase small subunit OS=Salmonella typhimurium GN=dadA PE=3 SV=1 DADA_SALTY - D-amino acid dehydrogenase small subunit OS=Salmonella typhimurium GN=dadA PE=3 SV=1	4.0E-75	[1..432]	[1..432]
gi\|168820549, gi... - gi\|205342707\|gb\|EDZ29471.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|168237865, gi... - gi\|197289224\|gb\|EDY28591.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|205332105, gi... - gi\|205332105\|gb\|EDZ18869.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPA - D-amino acid dehydrogenase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=dadA PE=3 SV=1 gi\|204927940, gi... - gi\|204927940\|ref\|ZP_03219141.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALPA - D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi A GN=dadA PE=3 SV=1 DADA_SALPK - D-amino acid dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=dadA PE=3 SV=1 DADA_SALA4 - D-amino acid dehydrogenase OS=Salmonella agona (strain SL483) GN=dadA PE=3 SV=1 DADA_SALSV - D-amino acid dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=dadA PE=3 SV=1 gi\|194471000, gi... - gi\|194471000\|ref\|ZP_03076984.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp....	8.0E-75	[1..432]	[1..432]
gi\|238713180, gi... - gi\|77956652\|ref\|ZP_00820737.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia bercov...	4.0E-74	[1..431]	[1..431]
DADA_SHIDS - D-amino acid dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dadA PE=3 SV=1	2.0E-73	[1..432]	[1..432]
DADA_ECOL6 - D-amino acid dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dadA PE... EG11407 - D-amino acid dehydrogenase / D-amino acid dehydrogenase DADA_ECODH - D-amino acid dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=dadA PE=3 SV=1 gi\|195938844 - gi\|195938844\|ref\|ZP_03084226.1\| D-amino acid dehydrogenase small subunit [Escherichia coli O157:H7 s... gi\|254792666, gi... - gi\|254792666\|ref\|YP_003077503.1\| D-amino acid dehydrogenase [Escherichia coli O157:H7 str. TW14359],... gi\|254161271, gi... - gi\|254161271\|ref\|YP_003044379.1\| D-amino acid dehydrogenase small subunit [Escherichia coli B str. R... gi\|208808515, gi... - gi\|208808515\|ref\|ZP_03250852.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... DADA_ECOSE - D-amino acid dehydrogenase OS=Escherichia coli (strain SE11) GN=dadA PE=3 SV=1 gi\|253773813, gi... - gi\|254288079\|ref\|YP_003053827.1\| D-amino acid dehydrogenase small subunit [Escherichia coli BL21(DE3... gi\|242376969, gi... - gi\|251784696\|ref\|YP_002999000.1\| hypothetical protein B21_01174 [Escherichia coli BL21], gi\|24237696... DADA_ECO8A - D-amino acid dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=dadA PE=3 SV=1 DADA_ECOBW - D-amino acid dehydrogenase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=dadA PE=3 SV=1 gi\|227836602, gi... - gi\|227886398\|ref\|ZP_04004203.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli 83972], ... gi\|75511775, gi\|... - gi\|75511775\|ref\|ZP_00734404.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... DADA_SHISS - D-amino acid dehydrogenase OS=Shigella sonnei (strain Ss046) GN=dadA PE=3 SV=1 DADA_ECO24 - D-amino acid dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dadA PE=3 SV=1 DADA_ECO57 - D-amino acid dehydrogenase OS=Escherichia coli O157:H7 GN=dadA PE=2 SV=1 DADA_ECOHS - D-amino acid dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=dadA PE=3 SV=1 DADA_ECOLC - D-amino acid dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dadA PE=3 S... EG11407 - D-amino acid dehydrogenase / D-amino acid dehydrogenase gi\|12514889, gi\|... - gi\|15801411\|ref\|NP_287428.1\| D-amino acid dehydrogenase small subunit [Escherichia coli O157:H7 EDL9... gi\|83587333 - gi\|83587333\|ref\|ZP_00925961.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|75233914 - gi\|75233914\|ref\|ZP_00718374.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|75241989 - gi\|75241989\|ref\|ZP_00725783.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|75212627 - gi\|75212627\|ref\|ZP_00712625.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|75228277 - gi\|75228277\|ref\|ZP_00714932.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... DADA_ECO55 - D-amino acid dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=dadA PE=3 SV=1 DADA_ECO7I - D-amino acid dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dadA PE=3 SV=1 DADA_ECOLU - D-amino acid dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dadA PE=3 SV=1 gi\|124500659, gi... - gi\|124528427\|ref\|ZP_01699737.1\| D-amino-acid dehydrogenase [Escherichia coli B], gi\|124500659\|gb\|EAY... DADA_ECOLI - D-amino acid dehydrogenase small subunit (EC 1.4.99.1) - Escherichia coli DADA_ECOL6 - D-amino acid dehydrogenase small subunit OS=Escherichia coli O6 GN=dadA PE=2 SV=1 gi\|89108034, gi\|... - gi\|89108034\|ref\|AP_001814.1\| D-amino acid dehydrogenase [Escherichia coli str. K-12 substr. W3110], ... gi\|13361148, gi\|... - gi\|15830938\|ref\|NP_309711.1\| D-amino acid dehydrogenase small subunit [Escherichia coli O157:H7 str.... DADA_ECOL5 - D-amino acid dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dadA PE=3 SV=1	2.0E-73	[1..432]	[1..432]
gi\|91071976, gi\|... - gi\|91210402\|ref\|YP_540388.1\| D-amino acid dehydrogenase small subunit [Escherichia coli UTI89], gi\|9... gi\|117623403, gi... - gi\|117623403\|ref\|YP_852316.1\| D-amino acid dehydrogenase small subunit [Escherichia coli APEC O1], g... gi\|226899902, gi... - gi\|237705145\|ref\|ZP_04535626.1\| D-amino acid dehydrogenase small subunit [Escherichia sp. 3_2_53FAA]...	4.0E-73	[1..432]	[3..434]
gi\|217328456, gi... - gi\|217328456\|ref\|ZP_03444538.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|208737611, gi... - gi\|208822126\|ref\|ZP_03262445.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|209395760, gi... - gi\|209395760\|ref\|YP_002270129.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7... gi\|194423978, gi... - gi\|194436995\|ref\|ZP_03069094.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli 101-1], ... gi\|208814910, gi... - gi\|208814910\|ref\|ZP_03256089.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|193071169, gi... - gi\|193071169\|ref\|ZP_03052092.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli E110019]... gi\|194426077, gi... - gi\|194426077\|ref\|ZP_03058633.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli B171], g... gi\|191168531, gi... - gi\|191168531\|ref\|ZP_03030317.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli B7A], gi... gi\|191170908, gi... - gi\|191170908\|ref\|ZP_03032459.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli F11], gi... gi\|189360057, gi... - gi\|189403544\|ref\|ZP_02796088.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|189405025, gi... - gi\|189405025\|ref\|ZP_02812699.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|26107904, gi\|... - gi\|26247503\|ref\|NP_753543.1\| D-amino acid dehydrogenase small subunit [Escherichia coli CFT073], gi\|... gi\|188999931, gi... - gi\|189010471\|ref\|ZP_02807555.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|189356326, gi... - gi\|189402296\|ref\|ZP_02781562.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ... gi\|170681298, gi... - gi\|170681298\|ref\|YP_001744012.1\| D-amino acid dehydrogenase, small subunit [Escherichia coli SMS-3-5... gi\|187776451, gi... - gi\|187776451\|ref\|ZP_02802803.2\| D-amino acid dehydrogenase, small subunit [Escherichia coli O157:H7 ...	4.0E-73	[1..432]	[3..434]
DADA_SHIB3 - D-amino acid dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dadA PE=3 ...	4.0E-73	[1..432]	[1..432]
gi\|56383395, gi\|... - gi\|56479844\|ref\|NP_707086.2\| D-amino acid dehydrogenase small subunit [Shigella flexneri 2a str. 301... DADA_SHIBS - D-amino acid dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=dadA PE=3 SV=1 gi\|30062706, gi\|... - gi\|30062706\|ref\|NP_836877.1\| D-amino acid dehydrogenase small subunit [Shigella flexneri 2a str. 245... DADA_SHIF8 - D-amino acid dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=dadA PE=3 SV=1 DADA_SHIFL - D-amino acid dehydrogenase OS=Shigella flexneri GN=dadA PE=3 SV=1	2.0E-72	[1..432]	[1..432]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVVILGSGV VGVTSAWYLS QAGHDVTVID RESGPAQETS AANAGQISPG YAAPWAAPGV  60
   61 PLKAIKWMFQ RHAPLAVRLD GTPFQLKWMW QMLRNCDTRH YMENKGRMVR LAEYSRDCLK 120
  121 TLRAATGIEY EGRQGGTLQL FRTAQQYENA TRDIAVLEDA GVPYQLLEAS RLAEVEPALA 180
  181 EVAHKLTGGL RLPNDETGDC QLFTQRLARM AEQAGVTFRF NTPVEKLLYE NDQIYGVKCA 240
  241 DEIIKADAYV MAFGSYSTAM LKGIVDIPVY PLKGYSLTIP IVEPDGAPVS TILDETYKIA 300
  301 ITRFDKRIRV GGMAEIVGFN TDLLQPRRET LEMVVRDLFP RGGHIEQATF WTGLRPMTPD 360
  361 GTPVVGRTRY KNLWLNTGHG TLGWTMACGS GQLLSDILLG RTPAIPYDDL SVARYRSDFT 420
  421 PTRPQRLHSA HN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2gagB
Description:	No description for 2gagB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits