YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|183577467, gi...
Organism:	Streptococcus pneumoniae MLV-016
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|183577467, gi....

Description	E-value	Query Range	Subject Range
gi\|25293165 - pir\|\|D97918 serine-tRNA ligase (EC 6.1.1.11) [imported] - Streptococcus pneumoniae (strain R6) gi\|15902416, gi\|... - gi\|15902416\|ref\|NP_357966.1\| seryl-tRNA synthetase [Streptococcus pneumoniae R6], gi\|15457932\|gb\|AAK...	407.0	[0..1]	[424..22]
gi\|251816747, gi... - gi\|253752458\|ref\|YP_003025599.1\| seryl-tRNA synthetase [Streptococcus suis SC84], gi\|251816747\|emb\|C... gi\|56684577 - gi\|56684577\|gb\|AAW21989.1\| SerS [Streptococcus suis] gi\|251820530, gi... - gi\|253754284\|ref\|YP_003027425.1\| seryl-tRNA synthetase [Streptococcus suis P1/7], gi\|251820530\|emb\|C...	402.0	[0..1]	[424..1]
SYS_STRPF - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=serS PE=3 SV=1	402.0	[0..1]	[424..1]
SYS_STRPY - (Q99YE2) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) gi\|13622796, gi\|... - gi\|15675591\|ref\|NP_269765.1\| seryl-tRNA synthetase [Streptococcus pyogenes M1 GAS], gi\|13622796\|gb\|A... SYS_STRP1 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M1 GN=serS PE=3 SV=1 gi\|71911296, gi\|... - gi\|71911296\|ref\|YP_282846.1\| seryl-tRNA synthetase [Streptococcus pyogenes MGAS5005], gi\|71854078\|gb...	401.0	[0..1]	[424..1]
gi\|81097200, gi\|... - gi\|81097200\|ref\|ZP_00875504.1\| Seryl-tRNA synthetase, class IIa [Streptococcus suis 89/1591], gi\|809...	401.0	[0..1]	[424..1]
SYS_STRPC - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=serS PE=3 SV=1 SYS_STRPB - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=serS PE=3 SV=1	400.0	[0..1]	[424..1]
SYS_STRTD - Serine--tRNA ligase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=serS PE=3 SV=1	400.0	[0..1]	[424..1]
SYS_STRP8 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=serS PE=3 SV=1 SYS_STRP6 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M6 GN=serS PE=3 SV=1 SYS_STRP8 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M18 GN=serS PE=3 SV=1 SYS_STRP6 - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=serS ...	400.0	[0..1]	[424..1]
SYS_STRPZ - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=serS PE=3 SV=1 gi\|56807927 - gi\|56807927\|ref\|ZP_00365750.1\| COG0172: Seryl-tRNA synthetase [Streptococcus pyogenes M49 591]	400.0	[0..1]	[424..1]

Back

Predicted Domain #1

Region A:
Residues: [1-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIKRIRTD FEAVAEKLAT RGVDAAVLNE MKEIDAKRRN ILVKVETLKA ERNTVSAEIA  60
   61 QAKRNKENTD DKIAAMQNLS AEVKALDAEL AEIDAKLTEF TTTLPNIPAD SVPVGADEDD 120
  121 NVEVRRWGTP REFDFEPKAH WDLGEDLGIL DWERGGKVTG ARFLFYKGLG ARLERAIYNF 180
  181 MLDEHGKEGY TEVITPYIVN HDSMFGTGQY PKFKEDTFEL SDTNFVLIPT AEVPLTNYYR 240
  241 DEILDGKDLP IYFTAMSPSF RSEAGSAGRD TRGLIRLHQF HKVEMVKFAK PEESYEELEK 300
  301 MTANAENILQ KLNLPYRVVA LSTGDMGFSA AKTYDLEVWI PAQNNYREIS SCSNTEDFQA 360
  361 RRAQIRYRDE ADGKVKLLHT LNGSGLAVGR TVAAILENYQ NEDGSVTIPE ALRPYMGGAE 420
  421 VIKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits