YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168464467, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168464467, gi....

Description	E-value	Query Range	Subject Range
gi\|32189733, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|15... gi\|21629327, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|21...	3.0E-55	[2..184]	[142..329]
gi\|28564914 - gi\|28564914\|gb\|AAO32541.1\| FUN34 [Saccharomyces castellii]	6.0E-50	[2..180]	[95..280]
gi\|95928934, gi\|... - gi\|95928934\|ref\|ZP_01311679.1\| GPR1/FUN34/yaaH [Desulfuromonas acetoxidans DSM 684], gi\|95134835\|gb\|...	6.0E-50	[6..185]	[89..268]
gi\|207341596 - gi\|207341596\|gb\|EDZ69605.1\| YNR002Cp-like protein [Saccharomyces cerevisiae AWRI1631] ATO2 - Putative transmembrane protein involved in export of ammonia, a starvation signal that promotes cell... gi\|190408996 - gi\|190408996\|gb\|EDV12261.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ATO2_YEAST - Ammonia transport outward protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATO2... gi\|151944531 - gi\|151944531\|gb\|EDN62809.1\| ammonia (ammonium) transport outward [Saccharomyces cerevisiae YJM789]	6.0E-49	[4..182]	[84..269]
gi\|14970589 - gi\|14970589\|emb\|CAA52243.2\| glyxoxylate pathway regulator [Yarrowia lipolytica]	2.0E-48	[3..185]	[74..261]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	2.0E-48	[3..185]	[74..261]
gi\|108810505, gi... - gi\|229900694\|ref\|ZP_04515818.1\| conserved inner membrane protein associated with acetate transport [... gi\|22127581, gi\|... - gi\|22127581\|ref\|NP_671004.1\| hypothetical protein y3707 [Yersinia pestis KIM], gi\|21960688\|gb\|AAM872... gi\|25331232 - pir\|\|AH0057 probable membrane protein YPO0467 [imported] - Yersinia pestis (strain CO92) gi\|165936593, gi... - gi\|89102679\|ref\|ZP_01175295.1\| COG1584: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|165920813, gi... - gi\|165927351\|ref\|ZP_02223183.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|16120796, gi\|... - gi\|218927664\|ref\|YP_002345539.1\| hypothetical protein YPO0467 [Yersinia pestis CO92], gi\|16120796\|re... gi\|108810051, gi... - gi\|108810051\|ref\|YP_653967.1\| hypothetical protein YPA_4061 [Yersinia pestis Antiqua], gi\|108781964\|... gi\|152962063, gi... - gi\|77631596\|ref\|ZP_00794182.1\| COG1584: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... gi\|149289905, gi... - gi\|150260497\|ref\|ZP_01917225.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289905\|... gi\|145600419, gi... - gi\|145600419\|ref\|YP_001164495.1\| hypothetical protein YPDSF_3164 [Yersinia pestis Pestoides F], gi\|1... gi\|229836950, gi... - gi\|229836950\|ref\|ZP_04457115.1\| conserved inner membrane protein associated with acetate transport [... gi\|229840354, gi... - gi\|229840354\|ref\|ZP_04460513.1\| conserved inner membrane protein associated with acetate transport [... gi\|229842434, gi... - gi\|229842434\|ref\|ZP_04462589.1\| conserved inner membrane protein associated with acetate transport [... gi\|166211974, gi... - gi\|166211974\|ref\|ZP_02238009.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|165992017, gi... - gi\|166008678\|ref\|ZP_02229576.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|166963225, gi... - gi\|167419231\|ref\|ZP_02310984.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|167401655, gi... - gi\|167401655\|ref\|ZP_02307149.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|167468975 - gi\|167468975\|ref\|ZP_02333679.1\| gpr1/fun34/yaaH family protein [Yersinia pestis FV-1] gi\|167426051, gi... - gi\|167426051\|ref\|ZP_02317804.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Mediaevalis s... gi\|162421810, gi... - gi\|77635670\|ref\|ZP_00797752.1\| COG1584: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|170025810, gi... - gi\|170025810\|ref\|YP_001722315.1\| hypothetical protein YPK_3595 [Yersinia pseudotuberculosis YPIII], ...	1.0E-47	[1..186]	[1..186]
gi\|49640141, gi\|... - gi\|50302153\|ref\|XP_451010.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640141\|emb\|CAH0259... gi\|49640141 - gi\|49640141\|emb\|CAH02598.1\| KLLA0A00242p [Kluyveromyces lactis]	1.0E-47	[2..188]	[77..273]
gi\|85094037 - gi\|85094037\|ref\|XP_959806.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32410835, gi\|... - gi\|32410835\|ref\|XP_325898.1\| hypothetical protein [Neurospora crassa], gi\|28921261\|gb\|EAA30570.1\| hy...	2.0E-47	[3..184]	[76..280]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTKLANPA PLGLMGFGMT TILLNLHNAG FFALDGIILA MGIFYGGIAQ IFAGLLEYKK  60
   61 GNTFGLTAFT SYGSFWLTLV AILLMPKMGL TDAPDAQLLG AYLGLWGVFT LFMFFGTLKA 120
  121 ARALQFVFLS LTVLFALLAV GNITGNEATI HIAGWVGLVC GASAIYLAMG EVLNEQFGRT 180
  181 ILPIGEAH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	117.148742
Match:	PF01184.10
Description:	No description for PF01184.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits