YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197247664, gi...
Organism:	Salmonella enterica subsp. enterica serovar Agona str. SL483
Length:	812 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197247664, gi....

Description	E-value	Query Range	Subject Range
gi\|224586208, gi... - gi\|224586208\|ref\|YP_002640007.1\| ribonuclease R [Salmonella enterica subsp. enterica serovar Paratyp... gi\|62182814, gi\|... - gi\|62182814\|ref\|YP_219231.1\| exoribonuclease R [Salmonella enterica subsp. enterica serovar Cholerae...	0.0	[1..794]	[1..794]
gi\|81243587, gi\|... - gi\|82779439\|ref\|YP_405788.1\| putative enzyme [Shigella dysenteriae Sd197], gi\|81243587\|gb\|ABB64297.1...	0.0	[1..794]	[15..805]
gi\|49176467, gi\|... - gi\|49176467\|ref\|NP_418600.3\| RNase R [Escherichia coli K12], gb\|AAC77136.1\| ribonuclease R; RNase R ... gi\|1361201, gi\|5... - gi\|537020\|gb\|AAA97075.1\| vacB [Escherichia coli], pir\|\|S56404 virulence-associated protein vacB homo... gi\|537020\|gb\|AAA... - vacB [Escherichia coli]	0.0	[1..794]	[15..809]
gi\|238903286, gi... - gi\|238903286\|ref\|YP_002929082.1\| exoribonuclease R, RNase R [Escherichia coli BW2952], gi\|238861060\|... gi\|194439533, gi... - gi\|83585083\|ref\|ZP_00923736.1\| COG0557: Exoribonuclease R [Escherichia coli 101-1], gi\|194439533\|ref... EG11259 - exoribonuclease R, RNase R / Exoribonuclease R, RNase R gi\|85676930, gi\|... - gi\|89110899\|ref\|AP_004679.1\| exoribonuclease R, RNase R [Escherichia coli str. K-12 substr. W3110], ... RNR_ECOLI - Ribonuclease R (EC 3.1.-.-) (RNase R) (Protein vacB) - Escherichia coli EG11259 - exoribonuclease R, RNase R / Exoribonuclease R, RNase R gi\|169891460, gi... - gi\|170083625\|ref\|YP_001732945.1\| exoribonuclease R, RNase R [Escherichia coli str. K-12 substr. DH10... gi\|253976009, gi... - gi\|254164108\|ref\|YP_003047216.1\| exoribonuclease R, RNase R [Escherichia coli B str. REL606], gi\|253... gi\|253775196, gi... - gi\|254290858\|ref\|YP_003056606.1\| exoribonuclease R, RNase R [Escherichia coli BL21(DE3)], gi\|2539801... gi\|251787428, gi... - gi\|251787428\|ref\|YP_003001732.1\| hypothetical protein B21_04008 [Escherichia coli BL21], gi\|24237970...	0.0	[1..794]	[1..795]
gi\|193066029, gi... - gi\|75255906\|ref\|ZP_00727638.1\| COG0557: Exoribonuclease R [Escherichia coli E22], gi\|193066029\|ref\|Z... gi\|75212272, gi\|... - gi\|75212272\|ref\|ZP_00712312.1\| COG0557: Exoribonuclease R [Escherichia coli B171], gi\|194426579\|ref\|...	0.0	[1..794]	[1..795]
gi\|24054862, gi\|... - gi\|24115534\|ref\|NP_710044.1\| putative enzyme [Shigella flexneri 2a str. 301], gi\|24054862\|gb\|AAN4575... gi\|30065551, gi\|... - gi\|30065551\|ref\|NP_839722.1\| putative enzyme [Shigella flexneri 2a str. 2457T], gi\|30043815\|gb\|AAP19...	0.0	[1..794]	[15..809]
RNR_SHIFL - Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4 gi\|161485844 - gi\|161485844\|ref\|NP_710044.2\| exoribonuclease R [Shigella flexneri 2a str. 301] gi\|161486368 - gi\|161486368\|ref\|NP_839722.2\| exoribonuclease R [Shigella flexneri 2a str. 2457T]	0.0	[1..794]	[1..795]
gi\|15804768, gi\|... - gi\|15804768\|ref\|NP_290809.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12519167\|gb\|AAG59... gi\|13364632 - gi\|13364632\|dbj\|BAB38578.1\| putative enzyme [Escherichia coli O157:H7 str. Sakai] gi\|13364632 - gi\|13364632\|dbj\|BAB38578.1\| putative enzyme [Escherichia coli O157:H7] gi\|25298860, gi\|... - pir\|\|C86114 probable enzyme vacB [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ...	0.0	[1..794]	[15..809]
gi\|75188890, gi\|... - gi\|75188890\|ref\|ZP_00702157.1\| COG0557: Exoribonuclease R [Escherichia coli E24377A], gi\|157156656\|r... gi\|110808097, gi... - gi\|110808097\|ref\|YP_691617.1\| exoribonuclease R [Shigella flexneri 5 str. 8401], gi\|110617645\|gb\|ABF... gi\|170021811, gi... - gi\|170021811\|ref\|YP_001726765.1\| exoribonuclease R [Escherichia coli ATCC 8739], gi\|169756739\|gb\|ACA... gi\|218363500, gi... - gi\|218556731\|ref\|YP_002389645.1\| exoribonuclease R [Escherichia coli IAI1], gi\|218363500\|emb\|CAR0115... gi\|218354660, gi... - gi\|218697928\|ref\|YP_002405595.1\| exoribonuclease R [Escherichia coli 55989], gi\|218354660\|emb\|CAV016... gi\|170681596, gi... - gi\|170681596\|ref\|YP_001746574.1\| ribonuclease R [Escherichia coli SMS-3-5], gi\|170519314\|gb\|ACB17492... gi\|194417183, gi... - gi\|194434598\|ref\|ZP_03066855.1\| ribonuclease R [Shigella dysenteriae 1012], gi\|194417183\|gb\|EDX33295... gi\|75515418, gi\|... - gi\|75515418\|ref\|ZP_00737575.1\| COG0557: Exoribonuclease R [Escherichia coli 53638], gi\|188492518\|ref... gi\|124528238, gi... - gi\|124528238\|ref\|ZP_01699562.1\| VacB and RNase II family 3'-5' exoribonucleases [Escherichia coli B]... gi\|192955794, gi... - gi\|75234272\|ref\|ZP_00718660.1\| COG0557: Exoribonuclease R [Escherichia coli E110019], gi\|193070848\|r... gi\|190904342, gi... - gi\|75231228\|ref\|ZP_00717635.1\| COG0557: Exoribonuclease R [Escherichia coli B7A], gi\|191165647\|ref\|Z... gi\|75198025, gi\|... - gi\|75198025\|ref\|ZP_00708095.1\| COG0557: Exoribonuclease R [Escherichia coli HS], gi\|157163643\|ref\|YP...	0.0	[1..794]	[1..795]
gi\|217325473, gi... - gi\|217325473\|ref\|ZP_03441557.1\| ribonuclease R [Escherichia coli O157:H7 str. TW14588], gi\|217321694... gi\|209398640, gi... - gi\|209398640\|ref\|YP_002273721.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4115], gi\|209160040... gi\|208738865, gi... - gi\|208818742\|ref\|ZP_03259062.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4042], gi\|208738865\|... gi\|208814409, gi... - gi\|208814409\|ref\|ZP_03255738.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4045], gi\|208735686\|... gi\|254796198, gi... - gi\|254796198\|ref\|YP_003081035.1\| exoribonuclease R, RNase R [Escherichia coli O157:H7 str. TW14359],... gi\|208806677, gi... - gi\|208806677\|ref\|ZP_03249014.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4206], gi\|208726478\|... gi\|195935969 - gi\|195935969\|ref\|ZP_03081351.1\| exoribonuclease R [Escherichia coli O157:H7 str. EC4024] gi\|38704239 - gi\|38704239\|ref\|NP_313182.2\| hypothetical protein ECs5155 [Escherichia coli O157:H7] gi\|38704239 - gi\|38704239\|ref\|NP_313182.2\| exoribonuclease R [Escherichia coli O157:H7 str. Sakai] gi\|168801833, gi... - gi\|189376071\|gb\|EDU94487.1\| ribonuclease R [Escherichia coli O157:H7 str. EC508], gi\|168801833\|ref\|Z... gi\|189375137, gi... - gi\|189375137\|gb\|EDU93553.1\| ribonuclease R [Escherichia coli O157:H7 str. EC869], gi\|168784815\|ref\|Z... gi\|168780610, gi... - gi\|189001856\|gb\|EDU70842.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4076], gi\|168780610\|ref\|... gi\|187770293, gi... - gi\|187770293\|gb\|EDU34137.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4196], gi\|168774109\|ref\|... gi\|168766457, gi... - gi\|189364335\|gb\|EDU82754.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4486], gi\|168766457\|ref\|... gi\|168760420, gi... - gi\|189368979\|gb\|EDU87395.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4501], gi\|168760420\|ref\|... gi\|189357916, gi... - gi\|189357916\|gb\|EDU76335.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4401], gi\|168754749\|ref\|... gi\|168751470, gi... - gi\|188014490\|gb\|EDU52612.1\| ribonuclease R [Escherichia coli O157:H7 str. EC4113], gi\|168751470\|ref\|... gi\|161367456 - gi\|161367456\|ref\|NP_290809.2\| exoribonuclease R [Escherichia coli O157:H7 EDL933]	0.0	[1..794]	[1..795]

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Predicted Domain #1

Region A:
Residues: [1-731]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASREEL AVELNIEGEE QLEALRRRLR  60
   61 AMERDGQLVF TRRQCYALPE RLDLLKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH 120
  121 GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTDA GVGFVVPDDS RLSFDILIPP 180
  181 EDVMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDMALRT HEIPYIWPQA 240
  241 VEQQVAGLKE EVPEEAKVGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA 300
  301 DVSYYVRPPT PLDREARNRG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTIS 360
  361 AKGRLTGYKF YEAVMSSHAR LTYTKVWHML QGDQDLREQY APLVKHIEEL HNLYKVLDKA 420
  421 REERGGISFE SEEAKFIFNA ERRIERIEQT QRNDAHKLIE ECMIMANISA ARFVEKAKEP 480
  481 ALFRIHDKPT TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESIADRP DAEMLQTMLL 540
  541 RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLSLHR AIKYLLAKEQ GNKGNTTETG 600
  601 GYHYSMEEML QLGQHCSMAE RRADEATRDV SDWLKCDFML DQVGNVFKGV IASVTGFGFF 660
  661 VRLDELFIDG LVHVSSLDND YYRFDQVGQR LIGESGGQTY RLGDRVEVRV EAVNMDERKI 720
  721 DFSLISSERA P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.0
Match:	2id0A
Description:	No description for 2id0A was found.

Predicted Domain #2

Region A:
Residues: [732-812]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNVGKTAREK AKKGESKNAG KRRQVGKKVN FEPDSAFRGE KKAKPKAAKK DARKAKKPSA  60
   61 KTQKIAAATK AKRAAKKKAA E

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits