YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213424925
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213424925.

Description	E-value	Query Range	Subject Range
gi\|75230021, gi\|... - gi\|75230021\|ref\|ZP_00716531.1\| COG0602: Organic radical activating enzymes [Escherichia coli B7A], g...	1.0E-55	[1..223]	[1..223]
gi\|56129152, gi\|... - gi\|56414895\|ref\|YP_151970.1\| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica serov... gi\|197363823, gi... - gi\|197363823\|ref\|YP_002143460.1\| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica ...	2.0E-55	[1..223]	[1..223]
gi\|62129087, gi\|... - gi\|62181454\|ref\|YP_217871.1\| hypothetical protein SC2884 [Salmonella enterica subsp. enterica serova...	3.0E-55	[1..223]	[1..223]
gi\|25497213 - gi\|25497213\|pir\|\|C85928 hypothetical protein ygcF [imported] - Escherichia coli (strain O157:H7, su... gi\|12517243, gi\|... - gi\|15803295\|ref\|NP_289328.1\| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933], gi\|125172...	4.0E-55	[1..223]	[1..223]
gi\|74313345, gi\|... - gi\|74313345\|ref\|YP_311764.1\| hypothetical protein SSON_2930 [Shigella sonnei Ss046], gi\|73856822\|gb\|...	5.0E-55	[1..223]	[1..223]
gi\|193071786, gi... - gi\|75214579\|ref\|ZP_00713123.1\| COG0602: Organic radical activating enzymes [Escherichia coli E110019...	8.0E-55	[1..223]	[1..223]
gi\|187430912, gi... - gi\|75176364\|ref\|ZP_00696508.1\| COG0602: Organic radical activating enzymes [Shigella boydii BS512], ... gi\|75256984, gi\|... - gi\|75256984\|ref\|ZP_00728560.1\| COG0602: Organic radical activating enzymes [Escherichia coli E22], g... gi\|209920225, gi... - gi\|209920225\|ref\|YP_002294309.1\| hypothetical protein ECSE_3034 [Escherichia coli SE11], gi\|20991348... gi\|82545074, gi\|... - gi\|82545074\|ref\|YP_409021.1\| hypothetical protein SBO_2656 [Shigella boydii Sb227], gi\|81246485\|gb\|A...	8.0E-55	[1..223]	[1..223]
gi\|13363104, gi\|... - gi\|15832887\|ref\|NP_311660.1\| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|194438962, gi... - gi\|83585572\|ref\|ZP_00924215.1\| COG0602: Organic radical activating enzymes [Escherichia coli 101-1],... gi\|168778760, gi... - gi\|189003552\|gb\|EDU72538.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|75187505, gi\|... - gi\|75187505\|ref\|ZP_00700772.1\| COG0602: Organic radical activating enzymes [Escherichia coli E24377A... gi\|168768869, gi... - gi\|189362097\|gb\|EDU80516.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|157162228, gi... - gi\|75196747\|ref\|ZP_00706817.1\| COG0602: Organic radical activating enzymes [Escherichia coli HS], gi... gi\|168802847, gi... - gi\|189375278\|gb\|EDU93694.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|82778146, gi\|... - gi\|82778146\|ref\|YP_404495.1\| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197], gi\|81242294... gi\|189372100, gi... - gi\|189372100\|gb\|EDU90516.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|89109563, gi\|... - gi\|89109563\|ref\|AP_003343.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|170682101, gi... - gi\|170682101\|ref\|YP_001744934.1\| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5], gi\|17... gi\|170082350, gi... - gi\|170082350\|ref\|YP_001731670.1\| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12 subst... gi\|238860367, gi... - gi\|238901913\|ref\|YP_002927709.1\| hypothetical protein BWG_2512 [Escherichia coli BW2952], gi\|2388603... gi\|188495163, gi... - gi\|188495163\|ref\|ZP_03002433.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849036... gi\|242378324, gi... - gi\|251786051\|ref\|YP_003000355.1\| hypothetical protein B21_02584 [Escherichia coli BL21], gi\|24237832... gi\|170766131, gi... - gi\|170766131\|ref\|ZP_02900942.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|253978769, gi... - gi\|254289462\|ref\|YP_003055210.1\| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)], gi\|253... gi\|254037826, gi... - gi\|254037826\|ref\|ZP_04871884.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683945... gi\|254162703, gi... - gi\|254162703\|ref\|YP_003045811.1\| hypothetical protein ECB_02622 [Escherichia coli B str. REL606], gi... gi\|254594116, gi... - gi\|254794716\|ref\|YP_003079553.1\| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str. TW143... gi\|168749899, gi... - gi\|188015830\|gb\|EDU53952.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168762823, gi... - gi\|189366881\|gb\|EDU85297.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189354704, gi... - gi\|189354704\|gb\|EDU73123.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|218433369, gi... - gi\|218706272\|ref\|YP_002413791.1\| hypothetical protein ECUMN_3104 [Escherichia coli UMN026], gi\|21843... gi\|218353107, gi... - gi\|218696375\|ref\|YP_002404042.1\| hypothetical protein EC55989_3051 [Escherichia coli 55989], gi\|2183... YGCF_ECOLI - Hypothetical protein ygcF - Escherichia coli gi\|195939488 - gi\|195939488\|ref\|ZP_03084870.1\| hypothetical protein EscherichcoliO157_24278 [Escherichia coli O157:... QUEE_ECO57 - 7-carboxy-7-deazaguanine synthase OS=Escherichia coli O157:H7 GN=queE PE=3 SV=1 gi\|194416881, gi... - gi\|194434862\|ref\|ZP_03067109.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... EG13034 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis / 7-carboxy-7-deazaguanine synthase; queuos... QUEE_SHIFL - 7-carboxy-7-deazaguanine synthase OS=Shigella flexneri GN=queE PE=3 SV=1 gi\|208813020, gi... - gi\|208813020\|ref\|ZP_03254349.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208725540, gi... - gi\|208805739\|ref\|ZP_03248076.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|209398503, gi... - gi\|209398503\|ref\|YP_002272239.1\| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str. E... gi\|208819186, gi... - gi\|208819186\|ref\|ZP_03259506.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|218355253, gi... - gi\|218547712\|ref\|YP_002381503.1\| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469],... gi\|217327761, gi... - gi\|217327761\|ref\|ZP_03443844.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... EG13034 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis / 7-carboxy-7-deazaguanine synthase; queuos... gi\|24114061, gi\|... - gi\|24114061\|ref\|NP_708571.1\| hypothetical protein SF2790 [Shigella flexneri 2a str. 301], gi\|2405318... gi\|30064123, gi\|... - gi\|30064123\|ref\|NP_838294.1\| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T], gi\|300423...	1.0E-54	[1..223]	[1..223]
gi\|215266166, gi... - gi\|215488094\|ref\|YP_002330525.1\| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str. E23... gi\|218428460, gi... - gi\|218690896\|ref\|YP_002399108.1\| hypothetical protein ECED1_3225 [Escherichia coli ED1a], gi\|2184284... gi\|117625003, gi... - gi\|117625003\|ref\|YP_853991.1\| hypothetical protein APECO1_3756 [Escherichia coli APEC O1], gi\|115514... gi\|218366531, gi... - gi\|218559762\|ref\|YP_002392675.1\| hypothetical protein ECS88_3041 [Escherichia coli S88], gi\|21836653... gi\|190908479, gi... - gi\|75241836\|ref\|ZP_00725655.1\| COG0602: Organic radical activating enzymes [Escherichia coli F11], g... gi\|91073711, gi\|... - gi\|91212137\|ref\|YP_542123.1\| hypothetical protein UTI89_C3140 [Escherichia coli UTI89], gi\|91073711\|... gi\|110344507, gi... - gi\|110642915\|ref\|YP_670645.1\| hypothetical protein ECP_2755 [Escherichia coli 536], gi\|110344507\|gb\|... gi\|218371254, gi... - gi\|218701268\|ref\|YP_002408897.1\| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39], gi\|2183... gi\|227834582, gi... - gi\|227888313\|ref\|ZP_04006118.1\| radical SAM domain protein [Escherichia coli 83972], gi\|227834582\|gb... gi\|237706601, gi... - gi\|237706601\|ref\|ZP_04537082.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|50250397 - gi\|50250397\|emb\|CAG25841.1\| hypothetical protein ygcF [Escherichia coli] gi\|26109580, gi\|... - gi\|26249173\|ref\|NP_755213.1\| hypothetical protein c3335 [Escherichia coli CFT073], gi\|26109580\|gb\|AA...	1.0E-54	[1..223]	[1..223]
gi\|110616103, gi... - gi\|110806555\|ref\|YP_690075.1\| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401], gi\|1106...	2.0E-54	[1..223]	[1..223]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYPINEMFQ TLQGEGYFTG VPAIFIRLQG CPVGCAWCDT KHTWDKLSDR EVSLFSILAK  60
   61 TKESDKWGAA SSEDLLAVIN RQGYTARHVV ITGGEPCIHD LMPLTDLLEK SGFSCQIETS 120
  121 GTHEVRCTPN TWVTVSPKVN MRGGYDVLSQ ALERANEIKH PVGRVRDIEA LDELLATLSD 180
  181 DKPRVIALQP ISQKEDATRL CIETCIARNW RLSMQTHKYL NIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	1tv7A
Description:	Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48331922124015	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: