YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205325206, gi...
Organism:	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205325206, gi....

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=truA] [protein=tRNA pseudouridine synthase A] [protein_id=YP_005238451.1] [location=complement... TRUA_SALTY - tRNA pseudouridine synthase A OS=Salmonella typhimurium GN=truA PE=3 SV=1 TRUA_SALTY - tRNA pseudouridine synthase A OS=Salmonella typhimurium GN=truA PE=3 SV=1 TRUA_SALTY - tRNA pseudouridine synthase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=tru... gi\|197263425, gi... - gi\|197263425\|ref\|ZP_03163499.1\| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica s... gi\|168261608, gi... - gi\|205349584\|gb\|EDZ36215.1\| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serov... gi\|205328800, gi... - gi\|205328800\|gb\|EDZ15564.1\| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serov...	0.0	[1..270]	[1..270]
TRUA_ECO27 - tRNA pseudouridine synthase A OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=truA PE=3 SV=1 gi\|226901163, gi... - gi\|237704797\|ref\|ZP_04535278.1\| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA], gi\|2269... gi\|191170294, gi... - gi\|75243129\|ref\|ZP_00726835.1\| COG0101: Pseudouridylate synthase [Escherichia coli F11], gi\|19117029... TRUA_ECO45 - tRNA pseudouridine synthase A OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=truA PE=3 SV=1 TRUA_ECO24 - tRNA pseudouridine synthase A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=truA PE=3 SV=1 sp\|B7UFX6\|TRUA_ECO27 - tRNA pseudouridine synthase A OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=truA PE=3 SV=1 TRUA_ECO81 - tRNA pseudouridine synthase A OS=Escherichia coli O81 (strain ED1a) GN=truA PE=3 SV=1 TRUA_ECOK1 - tRNA pseudouridine synthase A OS=Escherichia coli O1:K1 / APEC GN=truA PE=3 SV=1 TRUA_ECOL5 - tRNA pseudouridine synthase A OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=truA PE=3 SV=1 TRUA_ECOUT - tRNA pseudouridine synthase A OS=Escherichia coli (strain UTI89 / UPEC) GN=truA PE=3 SV=1	0.0	[1..270]	[1..270]
gi\|293415611\|ref... - tRNA pseudouridine synthase A [Escherichia coli B185] TRUA_ECOL6 - tRNA pseudouridine synthase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=truA... gi\|209764792, gi... - pir\|\|C85873 pseudouridylate synthase I [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|291283559\|ref... - tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi\|12516677, gi\|... - gi\|15802865\|ref\|NP_288892.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 EDL933], gi\|125... gi\|189362830, gi... - gi\|189362830\|gb\|EDU81249.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486], gi... TRUA_ECO57 - tRNA pseudouridine synthase A OS=Escherichia coli O157:H7 GN=truA PE=3 SV=1 gi\|168761239, gi... - gi\|189368293\|gb\|EDU86709.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501], gi... TRUA_ECOL6 - tRNA pseudouridine synthase A OS=Escherichia coli O6 GN=truA PE=3 SV=1 gi\|189357607, gi... - gi\|189357607\|gb\|EDU76026.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401], gi... gi\|293410675\|ref... - tRNA pseudouridine synthase A [Escherichia coli B354] gi\|261223227\|ref... - tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK2000] gi\|188017261, gi... - gi\|188017261\|gb\|EDU55383.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113], gi... gi\|168798493, gi... - gi\|189378874\|gb\|EDU97290.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508], gi\|... gi\|168787230, gi... - gi\|189372810\|gb\|EDU91226.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869], gi\|... gi\|168780178, gi... - gi\|189001906\|gb\|EDU70892.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076], gi... gi\|187771144, gi... - gi\|187771144\|gb\|EDU34988.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196], gi... gi\|293405784\|ref... - tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi\|13362672, gi\|... - gi\|15832456\|ref\|NP_311229.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. Sakai], gi... gi\|261259223\|ref... - tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK966] TRUA_ECOLU - tRNA pseudouridine synthase A OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=truA PE=3 S... TRUA_ECO7I - tRNA pseudouridine synthase A OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=truA PE=3 SV=1 gi\|208811862, gi... - gi\|208811862\|ref\|ZP_03253191.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045]... gi\|208727696, gi... - gi\|208807895\|ref\|ZP_03250232.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206]... gi\|195935697 - gi\|195935697\|ref\|ZP_03081079.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] TRUA_ECOSM - tRNA pseudouridine synthase A OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=truA PE=3 SV=1 TRUA_ECO55 - tRNA pseudouridine synthase A OS=Escherichia coli (strain 55989 / EAEC) GN=truA PE=3 SV=1 gi\|217319539, gi... - gi\|217327172\|ref\|ZP_03443255.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588... TRUA_ECO5E - tRNA pseudouridine synthase A OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=truA PE=3 SV=1 gi\|208741667, gi... - gi\|208821544\|ref\|ZP_03261864.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042]... gi\|293446655\|ref... - tRNA pseudouridine synthase A [Escherichia coli B088] gi\|254794211, gi... - gi\|254794211\|ref\|YP_003079048.1\| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW1435... gi\|227887378, gi... - gi\|227887378\|ref\|ZP_04005183.1\| tRNA pseudouridine synthase A [Escherichia coli 83972], gi\|227835728... TRUA_SHIDS - tRNA pseudouridine synthase A OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=truA PE=3 SV=1	0.0	[1..270]	[1..270]
EG10454 - tRNA pseudouridine(38-40) synthase / tRNA pseudouridine(38-40) synthase; mutations derepress the his... TRUA_ECOLI - tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine isomerase I) (tRNA pseudouridylate syntha... TRUA_ECOBW - tRNA pseudouridine synthase A OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=truA PE=3 SV=1 EG10454 - tRNA pseudouridine(38-40) synthase / tRNA pseudouridine(38-40) synthase; mutations derepress the his... gi\|89109138, gi\|... - gi\|89109138\|ref\|AP_002918.1\| pseudouridylate synthase I [Escherichia coli str. K-12 substr. W3110], ... TRUA_ECODH - tRNA pseudouridine synthase A OS=Escherichia coli (strain K12 / DH10B) GN=truA PE=3 SV=1	0.0	[1..270]	[1..270]
gi\|194424745, gi... - gi\|83588301\|ref\|ZP_00926926.1\| COG0101: Pseudouridylate synthase [Escherichia coli 101-1], gi\|194436... gi\|256021997\|ref... - tRNA pseudouridine synthase A [Escherichia sp. 4_1_40B] TRUA_ECOLC - tRNA pseudouridine synthase A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=truA PE=... gi\|253772758, gi... - gi\|254289088\|ref\|YP_003054836.1\| tRNA pseudouridine synthase A [Escherichia coli BL21(DE3)], gi\|2539... gi\|251785678, gi... - gi\|251785678\|ref\|YP_002999982.1\| hypothetical protein B21_02203 [Escherichia coli BL21], gi\|24237795... gi\|254162327, gi... - gi\|254162327\|ref\|YP_003045435.1\| tRNA pseudouridine synthase A [Escherichia coli B str. REL606], gi\|... gi\|124526483, gi... - gi\|124526483\|ref\|ZP_01698436.1\| tRNA pseudouridine synthase A [Escherichia coli B], gi\|124501954\|gb\|... gi\|75515683, gi\|... - gi\|75515683\|ref\|ZP_00737818.1\| COG0101: Pseudouridylate synthase [Escherichia coli 53638], gi\|188492... TRUA_ECOHS - tRNA pseudouridine synthase A OS=Escherichia coli O9:H4 (strain HS) GN=truA PE=3 SV=1	0.0	[1..270]	[1..270]
TRUA_SHIBS - tRNA pseudouridine synthase A OS=Shigella boydii serotype 4 (strain Sb227) GN=truA PE=3 SV=1	0.0	[1..270]	[1..270]
gi\|256017524\|ref... - tRNA pseudouridine synthase A [Shigella sp. D9] TRUA_SHIFL - tRNA pseudouridine synthase A OS=Shigella flexneri GN=truA PE=3 SV=1 TRUA_SHIB3 - tRNA pseudouridine synthase A OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=truA PE... gi\|194432876, gi... - gi\|83570126\|ref\|ZP_00921573.1\| COG0101: Pseudouridylate synthase [Shigella dysenteriae 1012], gi\|194... gi\|24113690, gi\|... - gi\|24113690\|ref\|NP_708200.1\| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 301], gi\|24052... gi\|30063744, gi\|... - gi\|30063744\|ref\|NP_837915.1\| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T], gi\|300... gi\|75259777, gi\|... - gi\|75259777\|ref\|ZP_00731079.1\| COG0101: Pseudouridylate synthase [Escherichia coli E22], gi\|19306228... TRUA_ECO8A - tRNA pseudouridine synthase A OS=Escherichia coli O8 (strain IAI1) GN=truA PE=3 SV=1 gi\|190901221, gi... - gi\|75228065\|ref\|ZP_00714745.1\| COG0101: Pseudouridylate synthase [Escherichia coli B7A], gi\|19116873... TRUA_ECOSE - tRNA pseudouridine synthase A OS=Escherichia coli (strain SE11) GN=truA PE=3 SV=1 TRUA_SHIF8 - tRNA pseudouridine synthase A OS=Shigella flexneri serotype 5b (strain 8401) GN=truA PE=3 SV=1 gi\|260844905\|ref... - pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009]	0.0	[1..270]	[1..270]
gi\|193068139, gi... - gi\|75238101\|ref\|ZP_00722106.1\| COG0101: Pseudouridylate synthase [Escherichia coli E110019], gi\|1930...	0.0	[1..270]	[1..270]
gi\|195183057 - gi\|195183057\|dbj\|BAG66617.1\| pseudouridylate synthase I [Escherichia coli O111:H-] gi\|75209305, gi\|... - gi\|75209305\|ref\|ZP_00709545.1\| COG0101: Pseudouridylate synthase [Escherichia coli B171], gi\|1944294...	0.0	[1..270]	[1..270]
TRUA_SHISS - tRNA pseudouridine synthase A OS=Shigella sonnei (strain Ss046) GN=truA PE=3 SV=1	0.0	[1..270]	[1..270]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQQSSPVY KIALGIEYDG SKYYGWQRQN EVRSVQEKLE KALSQVANEP INVFCAGRTD  60
   61 AGVHGTGQVV HFETTALRKD AAWTLGVNAN LPGDIAVRWV KTVPDDFHAR FSATARRYRY 120
  121 IIYNHRLRPA VLAKGVTHYY EPLDAERMHR AAQCLLGEND FTSFRAVQCQ SRTPWRNVMH 180
  181 INVTRHGPYV VVDIKANAFV HHMVRNIVGS LLEVGAHNQP ESWIAELLAA RDRTLAAATA 240
  241 KAEGLYLVAV DYPDRFDLPK PPMGPLFLAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	2nqpA
Description:	No description for 2nqpA was found.

Predicted functions:

Term	Confidence	Notes
pseudouridine synthase activity	5.60483019625575	bayes_pls_golite062009
intramolecular transferase activity	4.62815459483632	bayes_pls_golite062009
isomerase activity	3.43067391737824	bayes_pls_golite062009
catalytic activity	2.39224964671205	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: