YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207343283
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207343283.

Description	E-value	Query Range	Subject Range
LDB18 - Component of the dynactin complex, which is required for dynein activity; null mutant exhibits defec... LDB18_YEAST - Protein LDB18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LDB18 PE=1 SV=1 gi\|190406003 - gi\|190406003\|gb\|EDV09270.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207343283 - gi\|207343283\|gb\|EDZ70793.1\| YLL049Wp-like protein [Saccharomyces cerevisiae AWRI1631]	6.0E-98	[1..179]	[1..179]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLKLVEAL EYRCDRLERL IGAGYSANSD VSVQLDELYN QLHRLYFQGL KYSQDLLQLF  60
   61 NTFMAEDIEN VGAPDDICIF ASCFDDIYTL YSAFDELNSQ YMEFCQISKS SLDQISFKDA 120
  121 NIETKQLKKL PELVDNCNIM ILRSIAILNR FIDWNIEVNG FFQFQKKRLL NLQKVIYST

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits