YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207856180, gi...
Organism:	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Length:	933 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207856180, gi....

Description	E-value	Query Range	Subject Range
gi\|224467078, gi... - gi\|224582551\|ref\|YP_002636349.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs... gi\|200389929, gi... - gi\|200389929\|ref\|ZP_03216540.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Sa... gi\|194444060, gi... - gi\|194444060\|ref\|YP_002039973.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [S... gi\|62179310, gi\|... - gi\|62179310\|ref\|YP_215727.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enterica ... gi\|161615038, gi... - gi\|161615038\|ref\|YP_001589003.1\| alpha-ketoglutarate decarboxylase [Salmonella enterica subsp. enter...	0.0	[1..933]	[1..933]
gi\|82543153, gi\|... - gi\|82543153\|ref\|YP_407100.1\| alpha-ketoglutarate decarboxylase [Shigella boydii Sb227], gi\|81244564\|...	0.0	[1..933]	[1..933]
lcl\|NC_016856.1_... - [gene=kgd] [protein=alpha-ketoglutarate decarboxylase] [protein_id=YP_005236455.1] [location=802242.... gi\|16419246, gi\|... - gi\|16764106\|ref\|NP_459721.1\| alpha-ketoglutarate decarboxylase [Salmonella typhimurium LT2], gi\|1641... gi\|205328884, gi... - gi\|205328884\|gb\|EDZ15648.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Salmon...	0.0	[1..933]	[1..933]
gi\|193070663, gi... - gi\|75234496\|ref\|ZP_00718843.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com...	0.0	[1..933]	[1..933]
EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|217321828, gi... - gi\|217325607\|ref\|ZP_03441691.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|218360020, gi... - gi\|218553252\|ref\|YP_002386165.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI1], ... gi\|218364410, gi... - gi\|218557641\|ref\|YP_002390554.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli S88], g... gi\|218426083, gi... - gi\|218688519\|ref\|YP_002396731.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ED1a], ... EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|218350881, gi... - gi\|218694149\|ref\|YP_002401816.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 55989],... gi\|218699080, gi... - gi\|218699080\|ref\|YP_002406709.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI39],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|218704042, gi... - gi\|218704042\|ref\|YP_002411561.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli UMN026]... ODO1_ECO57 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1 gi\|75175924, gi\|... - gi\|75175924\|ref\|ZP_00696111.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75189747, gi\|... - gi\|75189747\|ref\|ZP_00703014.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|157160205, gi... - gi\|75194884\|ref\|ZP_00704954.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|194412889, gi... - gi\|75209706\|ref\|ZP_00709914.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75229642, gi\|... - gi\|75229642\|ref\|ZP_00716179.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|191174047, gi... - gi\|75237356\|ref\|ZP_00721398.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75256435, gi\|... - gi\|75256435\|ref\|ZP_00728093.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|188495881, gi... - gi\|75511613\|ref\|ZP_00734264.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|254591272, gi... - gi\|254791872\|ref\|YP_003076709.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli O... gi\|253972696, gi... - gi\|254160795\|ref\|YP_003043903.1\| alpha-ketoglutarate decarboxylase [Escherichia coli B str. REL606],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1 gi\|253325348, gi... - gi\|254287583\|ref\|YP_003053331.1\| alpha-ketoglutarate decarboxylase [Escherichia coli BL21(DE3)], gi\|... gi\|83585343, gi\|... - gi\|83585343\|ref\|ZP_00923990.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|168750657, gi... - gi\|188015214\|gb\|EDU53336.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|242376487, gi... - gi\|251784214\|ref\|YP_002998518.1\| hypothetical protein B21_00674 [Escherichia coli BL21], gi\|24237648... gi\|238859780, gi... - gi\|238899990\|ref\|YP_002925786.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli B... gi\|237707312, gi... - gi\|237707312\|ref\|ZP_04537793.1\| oxoglutarate dehydrogenase [Escherichia sp. 3_2_53FAA], gi\|226898522... gi\|227884308, gi... - gi\|227884308\|ref\|ZP_04002113.1\| oxoglutarate dehydrogenase (succinyl-transferring) [Escherichia coli... gi\|170080392, gi... - gi\|170080392\|ref\|YP_001729712.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli s... gi\|170519246, gi... - gi\|170681528\|ref\|YP_001742826.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... gi\|195939067 - gi\|195939067\|ref\|ZP_03084449.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 str. EC4... gi\|208726152, gi... - gi\|208806351\|ref\|ZP_03248688.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208816323, gi... - gi\|208816323\|ref\|ZP_03257502.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208737127, gi... - gi\|208822934\|ref\|ZP_03263252.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|115512043, gi... - gi\|117622919\|ref\|YP_851832.1\| alpha-ketoglutarate decarboxylase [Escherichia coli APEC O1], gi\|11551... gi\|209399395, gi... - gi\|209399395\|ref\|YP_002269349.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... ODO1_ECOLI - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) - Escheri... gi\|124501513, gi... - gi\|124526819\|ref\|ZP_01698701.1\| 2-oxoglutarate dehydrogenase, E1 subunit [Escherichia coli B], gi\|12... gi\|209917976, gi... - gi\|209917976\|ref\|YP_002292060.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli SE11], ... gi\|89107583, gi\|... - gi\|89107583\|ref\|AP_001363.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli str. ... gi\|189355772, gi... - gi\|189355772\|gb\|EDU74191.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|91209759, gi\|... - gi\|91209759\|ref\|YP_539745.1\| alpha-ketoglutarate decarboxylase [Escherichia coli UTI89], gi\|91071333... gi\|168764007, gi... - gi\|189365909\|gb\|EDU84325.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|13360209, gi\|... - gi\|15830005\|ref\|NP_308778.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli O157:H7 str... gi\|189363590, gi... - gi\|189363590\|gb\|EDU82009.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|110342526, gi... - gi\|110640934\|ref\|YP_668662.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 536], gi\|1... gi\|187767229, gi... - gi\|187767229\|gb\|EDU31073.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168779209, gi... - gi\|189002698\|gb\|EDU71684.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168786879, gi... - gi\|189372978\|gb\|EDU91394.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|189376465, gi... - gi\|189376465\|gb\|EDU94881.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|170020930, gi... - gi\|170020930\|ref\|YP_001725884.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ATCC 87...	0.0	[1..933]	[1..933]
gi\|24111998, gi\|... - gi\|24111998\|ref\|NP_706508.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 301], gi\|2... gi\|30040356, gi\|... - gi\|30062111\|ref\|NP_836282.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 2457T], gi...	0.0	[1..933]	[1..933]
gi\|81240142, gi\|... - gi\|82775994\|ref\|YP_402341.1\| alpha-ketoglutarate decarboxylase [Shigella dysenteriae Sd197], gi\|8124...	0.0	[1..933]	[1..933]
gi\|56414147, gi\|... - gi\|56414147\|ref\|YP_151222.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subsp. e... gi\|197094546, gi... - gi\|197363069\|ref\|YP_002142706.1\| 2-oxoglutarate dehydrogenase E1 component [Salmonella enterica subs...	0.0	[1..933]	[1..933]
gi\|43019 - gi\|43019\|emb\|CAA25280.1\| unnamed protein product [Escherichia coli] gi\|146201 - gi\|146201\|gb\|AAA23897.1\| 2-oxoglutarate dehydrogenase [Escherichia coli K12]	0.0	[1..933]	[1..933]
gi\|110804647, gi... - gi\|110804647\|ref\|YP_688167.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 5 str. 8401], gi\|...	0.0	[1..933]	[1..933]

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Predicted Domain #1

Region A:
Residues: [1-933]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNSALKAWL DSSYLSGSNQ SWIEQLYEDF LTDPDSVDAN WRLTFQQLPG TGVKPDQLHS  60
   61 KTREYFRRQA LAGSRHSSTI SDPDTNVKQV KVLQLINAYR FRGHQHANLD PLGLWKQERV 120
  121 ADLDPSFHDL TEADFQETFN VGSFASGKET MKLGELLDAL KQTYCGPIGA EYMHITSTEE 180
  181 KRWIQQRIES GRAAFSADEK KRFLNELTAA EGLERYLGAK FPGAKRFSLE GGDALIPMLK 240
  241 EMVRHAGNSG TREVVLGMAH RGRLNVLINV LGKKPQDLFD EFAGKHKEHL GTGDVKYHMG 300
  301 FSSDIETEGG LVHLALAFNP SHLEIVSPVV MGSVRARLDR LDEPSSNKVL PITIHGDAAV 360
  361 TGQGVVQETL NMSKARGYEV GGTVRIVINN QVGFTTSNPL DARSTPYCTD IGKMVQAPIF 420
  421 HVNADDPEAV AFVTRLALDF RNTFKRDVFI DLVCYRRHGH NEADEPSATQ PLMYQKIKKH 480
  481 PTPRKIYADK LEADKVATLE DATEMVNLYR DALDAGECVV KEWRPMNMHS FTWSPYLNHE 540
  541 WDEAYPNKVE MKRLQELAKR ISTVPEAIEM QSRVAKIYGD RQAMAAGEKL FDWGGAENLA 600
  601 YATLVDEGIP VRLSGEDSGR GTFFHRHAVI HNQTNGSTYT PLQHIHSGQG QFKVWDSVLS 660
  661 EEAVLAFEYG YATAEPRTLT IWEAQFGDFA NGAQVVIDQF ISSGEQKWGR MCGLVMLLPH 720
  721 GYEGQGPEHS SARLERYLQL CAEQNMQVCV PSTPAQVYHM LRRQALRGMR RPLVVMSPKS 780
  781 LLRHPLAVST LDELANGSFQ PAIGEIDELD PKAVKRVVMC SGKVYYDLLE QRRKNDQKDV 840
  841 AIVRIEQLYP FPHKAVQEAL QPYAHVHDFV WCQEEPLNQG AWYCSQHHFR EVIPFGAALR 900
  901 YAGRPASASP AVGYMSVHQK QQQDLVNDAL NVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2jgdB
Description:	No description for 2jgdB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits