YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194401554, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL254
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194401554, gi....

Description	E-value	Query Range	Subject Range
gi\|197364626, gi... - gi\|197364626\|ref\|YP_002144263.1\| probable cytochrome c peroxidase [Salmonella enterica subsp. enteri... gi\|56415700, gi\|... - gi\|56415700\|ref\|YP_152775.1\| cytochrome c peroxidase [Salmonella enterica subsp. enterica serovar Pa...	0.0	[1..466]	[1..466]
gi\|62182308, gi\|... - gi\|62182308\|ref\|YP_218725.1\| putative cytochrome c peroxidase [Salmonella enterica subsp. enterica s... gi\|224585620, gi... - gi\|224585620\|ref\|YP_002639419.1\| putative cytochrome c peroxidase [Salmonella enterica subsp. enteri...	0.0	[1..466]	[1..466]
gi\|227839257, gi... - gi\|227883677\|ref\|ZP_04001482.1\| cytochrome C peroxidase [Escherichia coli 83972], gi\|227839257\|gb\|EE... gi\|26110580, gi\|... - gi\|26250151\|ref\|NP_756191.1\| cytochrome C peroxidase [Escherichia coli CFT073], gi\|26110580\|gb\|AAN82...	0.0	[5..463]	[1..463]
gi\|254163440, gi... - gi\|254163440\|ref\|YP_003046548.1\| predicted cytochrome C peroxidase [Escherichia coli B str. REL606],... gi\|226839201, gi... - gi\|254038695\|ref\|ZP_04872751.1\| cytochrome C peroxidase [Escherichia sp. 1_1_43], gi\|226839201\|gb\|EE... YHJA_ECOLI - Probable cytochrome c peroxidase (EC 1.11.1.5) - Escherichia coli gi\|254290190, gi... - gi\|254290190\|ref\|YP_003055938.1\| predicted cytochrome C peroxidase [Escherichia coli BL21(DE3)], gi\|... EG12244 - putative cytochrome C peroxidase / Probable cytochrome c peroxidase; mutants are sensitive to peroxi... EG12244 - putative cytochrome C peroxidase / Probable cytochrome c peroxidase; mutants are sensitive to peroxi... gi\|242379037, gi... - gi\|251786764\|ref\|YP_003001068.1\| hypothetical protein B21_03319 [Escherichia coli BL21], gi\|24237903... gi\|238862219, gi... - gi\|238902607\|ref\|YP_002928403.1\| putative cytochrome C peroxidase [Escherichia coli BW2952], gi\|2388... gi\|83588627, gi\|... - gi\|83588627\|ref\|ZP_00927251.1\| COG1858: Cytochrome c peroxidase [Escherichia coli 101-1], gi\|1944359... gi\|85676526, gi\|... - gi\|89110495\|ref\|AP_004275.1\| predicted cytochrome C peroxidase [Escherichia coli str. K-12 substr. W... gi\|170083029, gi... - gi\|170083029\|ref\|YP_001732349.1\| cytochrome C peroxidase [Escherichia coli str. K-12 substr. DH10B],...	0.0	[5..463]	[1..463]
gi\|110807780, gi... - gi\|110807780\|ref\|YP_691300.1\| putative cytochrome C peroxidase [Shigella flexneri 5 str. 8401], gi\|1... gi\|56383926, gi\|... - gi\|56480375\|ref\|NP_709337.2\| putative cytochrome C peroxidase [Shigella flexneri 2a str. 301], gi\|56... gi\|30043422, gi\|... - gi\|30065161\|ref\|NP_839332.1\| putative cytochrome C peroxidase [Shigella flexneri 2a str. 2457T], gi\|...	0.0	[5..463]	[1..463]
gi\|209914237, gi... - gi\|209920978\|ref\|YP_002295062.1\| putative cytochrome C peroxidase [Escherichia coli SE11], gi\|209914... gi\|193061723, gi... - gi\|75260197\|ref\|ZP_00731465.1\| COG1858: Cytochrome c peroxidase [Escherichia coli E22], gi\|193061723... gi\|75237456, gi\|... - gi\|75237456\|ref\|ZP_00721489.1\| COG1858: Cytochrome c peroxidase [Escherichia coli E110019], gi\|19306... gi\|190904665, gi... - gi\|75231636\|ref\|ZP_00717994.1\| COG1858: Cytochrome c peroxidase [Escherichia coli B7A], gi\|191165263... gi\|194413301, gi... - gi\|75210063\|ref\|ZP_00710242.1\| COG1858: Cytochrome c peroxidase [Escherichia coli B171], gi\|19442871... gi\|218556068, gi... - gi\|218556068\|ref\|YP_002388981.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli IAI1], gi\|2183... gi\|218697227, gi... - gi\|218697227\|ref\|YP_002404894.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli 55989], gi\|218...	0.0	[5..463]	[1..463]
gi\|15804062, gi\|... - gi\|15804062\|ref\|NP_290098.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7 EDL933], gi\|... gi\|208821426, gi... - gi\|208821426\|ref\|ZP_03261746.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O15... gi\|208733197, gi... - gi\|208811920\|ref\|ZP_03253249.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O15... gi\|217321721, gi... - gi\|217325500\|ref\|ZP_03441584.1\| di-hem cytochrome c peroxidase [Escherichia coli O157:H7 str. TW1458... gi\|209159035, gi... - gi\|209397635\|ref\|YP_002272996.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O1... gi\|189379988, gi... - gi\|189379988\|gb\|EDU98404.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|189374697, gi... - gi\|189374697\|gb\|EDU93113.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|208807304, gi... - gi\|208807304\|ref\|ZP_03249641.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O15... gi\|195935046 - gi\|195935046\|ref\|ZP_03080428.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7 str. EC40... gi\|189364649, gi... - gi\|189364649\|gb\|EDU83068.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|189369613, gi... - gi\|189369613\|gb\|EDU88029.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|189002274, gi... - gi\|189002274\|gb\|EDU71260.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|187771627, gi... - gi\|187771627\|gb\|EDU35471.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|254795471, gi... - gi\|254795471\|ref\|YP_003080308.1\| predicted cytochrome C peroxidase [Escherichia coli O157:H7 str. TW... gi\|189359389, gi... - gi\|189359389\|gb\|EDU77808.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|168746944, gi... - gi\|188018360\|gb\|EDU56482.1\| di-haem cytochrome c peroxidase family protein [Escherichia coli O157:H7... gi\|13363872, gi\|... - gi\|15833652\|ref\|NP_312425.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7 str. Sakai],... gi\|13363872, gi\|... - gi\|15833652\|ref\|NP_312425.1\| putative cytochrome C peroxidase [Escherichia coli O157:H7], gi\|1336387... gi\|25285572, gi\|... - pir\|\|G86024 cytochrome-c peroxidase (EC 1.11.1.5) [similarity] - Escherichia coli (strain O157:H7, s...	0.0	[5..463]	[1..463]
gi\|218429366, gi... - gi\|218691802\|ref\|YP_002400014.1\| cytochrome C peroxidase (cpp-like) [Escherichia coli ED1a], gi\|2184... gi\|191170365, gi... - gi\|75242690\|ref\|ZP_00726434.1\| COG1858: Cytochrome c peroxidase [Escherichia coli F11], gi\|191170365...	0.0	[5..463]	[1..463]
gi\|82545882, gi\|... - gi\|82545882\|ref\|YP_409829.1\| putative cytochrome C peroxidase [Shigella boydii Sb227], gi\|81247293\|g...	0.0	[5..463]	[1..463]
gi\|124500406, gi... - gi\|124528565\|ref\|ZP_01699843.1\| Cytochrome-c peroxidase [Escherichia coli B], gi\|124500406\|gb\|EAY478... gi\|74313936, gi\|... - gi\|74313936\|ref\|YP_312355.1\| putative cytochrome C peroxidase [Shigella sonnei Ss046], gi\|73857413\|g... gi\|188496398, gi... - gi\|75516021\|ref\|ZP_00738139.1\| COG1858: Cytochrome c peroxidase [Escherichia coli 53638], gi\|1884963... gi\|75197434, gi\|... - gi\|75197434\|ref\|ZP_00707504.1\| COG1858: Cytochrome c peroxidase [Escherichia coli HS], gi\|157162997\|... gi\|170018253, gi... - gi\|170018253\|ref\|YP_001723207.1\| cytochrome-c peroxidase [Escherichia coli ATCC 8739], gi\|169753181\|...	0.0	[5..463]	[1..463]

Back

Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKITLYATT VITVGLLCYL GLSGYVWYYD KQRSKKSDVQ ASVVGENNKI LGYFREKGCD  60
   61 YCHTPSAELP FYSSFPVAKQ LMDYDIQLGY KSFNLEAVRA ALIADTPVPQ SELNKIEWVM 120
  121 QHQTMPPTRY VALHWAGGVS DKERTDILNW IADQRERN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.73
Match:	1w5cT
Description:	Photosystem II from Thermosynechococcus elongatus
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [159-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YASADTDPAH RNEPVQPIPR NIPVDAKKVD LGFRLYHDER LSGDSTISCA HCHALNAGGV  60
   61 DGRKTSIGVG GAVGPINAPT VFNSVFNIEQ FWDGRAATLQ EQAGGPPLNP IEMASKSWDE 120
  121 IISKLDKDPV LKKDFQAVYP QGFTGENITD AIAEFEKTLI TPDSAFDKWL RGDENALTAQ 180
  181 QKHGYQLFKE NKCATCHGGI ILGGRSFEPL GLKRDFNFGE ITAADIGRMN VTKEVRDKLR 240
  241 QKVPGLRNVA LTAPYFHRGD VPTLDGAVKL MLRYQVGTDL PQNDIDDIVA FLESLTGVYT 300
  301 PYQPEYAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1iqcA
Description:	Di-heme cytochrome c peroxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peroxidase activity	1.75209676626315	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	1.75209676626315	bayes_pls_golite062009
antioxidant activity	1.56037732185826	bayes_pls_golite062009
oxidoreductase activity	0.688831040524478	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: