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View Structure Prediction Details

Protein: gi|190405571
Organism: Saccharomyces cerevisiae RM11-1a
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405571.

Description E-value Query
Range
Subject
Range
RRAAH_YEAST - 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...
YER010C - Protein of unknown function, forms a ring-shaped homotrimer; has similarity to members of the prokar...
gi|190405571 - gi|190405571|gb|EDV08838.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|207346037 - gi|207346037|gb|EDZ72655.1| YER010Cp-like protein [Saccharomyces cerevisiae AWRI1631]
2.0E-70 [1..234] [1..234]
DLPA_LEGPH - Protein DlpA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM ...
DLPA_LEGPN - (Q48806) Protein dlpA
2.0E-46 [3..225] [395..599]
gi|167425923, gi... - gi|167425923|ref|ZP_02317676.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
gi|167418817, gi... - gi|167418817|ref|ZP_02310570.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
gi|170026328, gi... - gi|170026328|ref|YP_001722833.1| hypothetical protein YPK_4121 [Yersinia pseudotuberculosis YPIII], ...
gi|167468404 - gi|167468404|ref|ZP_02333108.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
gi|186893426, gi... - gi|186893426|ref|YP_001870538.1| hypothetical protein YPTS_0082 [Yersinia pseudotuberculosis PB1/+],...
gi|22123976, gi|... - gi|22123976|ref|NP_667399.1| hypothetical protein y0055 [Yersinia pestis KIM], gi|21956715|gb|AAM836...
gi|25509516 - pir||AB0011 probable transferase [imported] - Yersinia pestis (strain CO92)
gi|150260856, gi... - gi|150260856|ref|ZP_01917584.1| possible transferase [Yersinia pestis CA88-4125], gi|149290264|gb|ED...
gi|115345912, gi... - gi|218927301|ref|YP_002345176.1| hypothetical protein YPO0082 [Yersinia pestis CO92], gi|16120433|re...
gi|51594436, gi|... - gi|51594436|ref|YP_068627.1| hypothetical protein YPTB0078 [Yersinia pseudotuberculosis IP 32953], g...
gi|229706645, gi... - gi|229836197|ref|ZP_04456365.1| possible transferase [Yersinia pestis Pestoides A], gi|229706645|gb|...
gi|162353916, gi... - gi|77633903|ref|ZP_00796016.1| COG0684: Demethylmenaquinone methyltransferase [Yersinia pestis Angol...
gi|165936164, gi... - gi|89103454|ref|ZP_01176031.1| COG0684: Demethylmenaquinone methyltransferase [Yersinia pestis biova...
gi|165989611, gi... - gi|166011465|ref|ZP_02232363.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
gi|229839933, gi... - gi|229839933|ref|ZP_04460092.1| possible transferase [Yersinia pestis biovar Orientalis str. PEXU2],...
gi|117671930, gi... - gi|77630841|ref|ZP_00793427.1| COG0684: Demethylmenaquinone methyltransferase [Yersinia pseudotuberc...
gi|108781363, gi... - gi|108809450|ref|YP_653366.1| hypothetical protein YPA_3459 [Yersinia pestis Antiqua], gi|108781363|...
gi|165926105, gi... - gi|165926105|ref|ZP_02221937.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
gi|229842015, gi... - gi|229842015|ref|ZP_04462170.1| possible transferase [Yersinia pestis biovar Orientalis str. India 1...
gi|108813926, gi... - gi|229904456|ref|ZP_04519567.1| possible transferase [Yersinia pestis Nepal516], gi|229678574|gb|EEO...
gi|167399092, gi... - gi|167399092|ref|ZP_02304616.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
gi|166205055, gi... - gi|166213653|ref|ZP_02239688.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase...
Q66GA4|Q66GA4_YERPS - Possible transferase - Yersinia pseudotuberculosis
gi|145601063, gi... - gi|145601063|ref|YP_001165139.1| hypothetical protein YPDSF_3821 [Yersinia pestis Pestoides F], gi|1...
3.0E-43 [1..211] [19..209]
gi|17431705 - gi|17431705|emb|CAD18382.1| putative dimethylmenaquinone methyltransferase; protein [Ralstonia solan...
gi|17549452 - gi|17549452|ref|NP_522792.1| putative transferase protein [Ralstonia solanacearum GMI1000]
5.0E-42 [4..216] [11..197]
gi|15074699 - gi|15074699|emb|CAC46344.1| Demethylmenaquinone methyltransferase [Sinorhizobium meliloti 1021]
gi|15965518 - gi|15965518|ref|NP_385871.1| hypothetical protein SMc00502 [Sinorhizobium meliloti 1021]
2.0E-41 [2..220] [14..218]
RRAAH_BACHD - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Bacillus halodurans (strain ATCC BAA-125 / DS...
YJ38_BACHD, Y193... - (Q9KBI9) Hypothetical protein BH1938, Uncharacterized protein BH1938 OS=Bacillus halodurans GN=BH193...
3.0E-41 [4..222] [9..201]
gi|7573254 - gi|7573254|emb|CAB87566.1| FldZ protein [Sphingomonas sp. LB126]
8.0E-41 [1..193] [14..182]
Y644_METJA - Uncharacterized protein MJ0644 OS=Methanocaldococcus jannaschii GN=MJ0644 PE=4 SV=1
Y644_METJA - Uncharacterized protein MJ0644 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-...
1.0E-39 [7..215] [16..203]
gi|146275623, gi... - ref|ZP_00302744.1| COG0684: Demethylmenaquinone methyltransferase [Novosphingobium aromaticivorans D...
gi|3378387, gi|1... - gi|3378387|gb|AAD03970.1| unknown [Novosphingobium aromaticivorans], pir||T31246 hypothetical protei...
2.0E-39 [4..219] [7..207]
HMGA_PSEOC - 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase OS=Pseudomonas ...
4.0E-39 [2..212] [17..198]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLQKLQRF STCDISDGLL NVYNIPTGGY FPNLTAISPP QNSSIVGTAY TVLFAPIDDP  60
   61 RPAVNYIDSV PPNSILVLAL EPHLQSQFHP FIKITQAMYG GLMSTRAQYL KSNGTVVFGR 120
  121 IRDVDEHRTL NHPVFAYGVG SCAPKAVVKA VGTNVQLKIL TSDGVTQTIC PGDYIAGDNN 180
  181 GIVRIPVQET DISKLVTYIE KSIEVDLLVS EDIKNGIPAK QAQNDRRSVL KKYI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 83.09691
Match: PF03737
Description: Demethylmenaquinone methyltransferase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle