YRC Public Data Repository - Protein Structure Prediction

Protein:	PROB_SALNS
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL254
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROB_SALNS.

Description	E-value	Query Range	Subject Range
gi\|91070905, gi\|... - gi\|91209331\|ref\|YP_539317.1\| glutamate 5-kinase [Escherichia coli UTI89], gi\|91070905\|gb\|ABE05786.1\|... gi\|26106685, gi\|... - gi\|26246287\|ref\|NP_752326.1\| gamma-glutamyl kinase [Escherichia coli CFT073], gi\|26106685\|gb\|AAN7887...	4.0E-92	[1..367]	[14..380]
PROB_SHIFL - Glutamate 5-kinase OS=Shigella flexneri GN=proB PE=3 SV=1 gi\|56383193, gi\|... - gi\|56479642\|ref\|NP_706244.2\| gamma-glutamyl kinase [Shigella flexneri 2a str. 301], gi\|56383193\|gb\|A... gi\|30061861, gi\|... - gi\|30061861\|ref\|NP_836032.1\| gamma-glutamyl kinase [Shigella flexneri 2a str. 2457T], gi\|30040105\|gb...	1.0E-91	[1..367]	[1..367]
EG10768 - gamma-glutamate kinase / Glutamate 5-kinase, proline biosynthesis; dimeric; feedback inhibition by p... PROB_ECOLC - Glutamate 5-kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proB PE=3 SV=1 gi\|15829523, gi\|... - gi\|15829523\|ref\|NP_308296.1\| gamma-glutamyl kinase [Escherichia coli O157:H7 str. Sakai], gi\|1335972... PROB_ECOL5 - Glutamate 5-kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=proB PE=3 SV=1 PROB_SHIF8 - Glutamate 5-kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=proB PE=3 SV=1 PROB_ECOL6 - Glutamate 5-kinase OS=Escherichia coli O6 GN=proB PE=3 SV=1 gi\|208818393, gi... - gi\|208818393\|ref\|ZP_03258713.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4042], gi\|208738... gi\|208814371, gi... - gi\|208814371\|ref\|ZP_03255700.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4045], gi\|208735... PROB_ECOSE - Glutamate 5-kinase OS=Escherichia coli (strain SE11) GN=proB PE=3 SV=1 PROB_ECO5E - Glutamate 5-kinase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=proB PE=3 SV=1 gi\|217321799, gi... - gi\|217325578\|ref\|ZP_03441662.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. TW14588], gi\|21732... PROB_ECO27 - Glutamate 5-kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proB PE=3 SV=1 EG10768 - gamma-glutamate kinase / Glutamate 5-kinase, proline biosynthesis; dimeric; feedback inhibition by p... PROB_ECOK1 - Glutamate 5-kinase OS=Escherichia coli O1:K1 / APEC GN=proB PE=3 SV=1 PROB_ECO45 - Glutamate 5-kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=proB PE=3 SV=1 PROB_ECO57 - Glutamate 5-kinase OS=Escherichia coli O157:H7 GN=proB PE=3 SV=1 gi\|124501704, gi... - gi\|124526648\|ref\|ZP_01698557.1\| glutamate 5-kinase [Escherichia coli B], gi\|124501704\|gb\|EAY49166.1\|... PROB_ECO8A - Glutamate 5-kinase OS=Escherichia coli O8 (strain IAI1) GN=proB PE=3 SV=1 PROB_ECOUT - Glutamate 5-kinase OS=Escherichia coli (strain UTI89 / UPEC) GN=proB PE=3 SV=2 gi\|188999644, gi... - gi\|188999644\|gb\|EDU68630.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4076], gi\|168783003\|... gi\|15799947, gi\|... - gi\|15799947\|ref\|NP_285959.1\| gamma-glutamyl kinase [Escherichia coli O157:H7 EDL933], gi\|12513016\|gb... gi\|168776117, gi... - gi\|187768425\|gb\|EDU32269.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4196], gi\|168776117\|... gi\|189377327, gi... - gi\|189377327\|gb\|EDU95743.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC508], gi\|168800319\|r... gi\|189370716, gi... - gi\|189370716\|gb\|EDU89132.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC869], gi\|168789715\|r... PROB_ECOSM - Glutamate 5-kinase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proB PE=3 SV=1 PROB_ECODH - Glutamate 5-kinase OS=Escherichia coli (strain K12 / DH10B) GN=proB PE=3 SV=1 gi\|208728806, gi... - gi\|208809005\|ref\|ZP_03251342.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4206], gi\|208728... gi\|195938645 - gi\|195938645\|ref\|ZP_03084027.1\| gamma-glutamyl kinase [Escherichia coli O157:H7 str. EC4024] gi\|75258755 - gi\|75258755\|ref\|ZP_00730145.1\| COG0263: Glutamate 5-kinase [Escherichia coli E22] gi\|188493000, gi... - gi\|75513572\|ref\|ZP_00735963.1\| COG0263: Glutamate 5-kinase [Escherichia coli 53638], gi\|188493000\|re... gi\|192958093, gi... - gi\|75237300\|ref\|ZP_00721347.1\| COG0263: Glutamate 5-kinase [Escherichia coli E110019], gi\|193068730\|... gi\|75241686, gi\|... - gi\|75241686\|ref\|ZP_00725523.1\| COG0263: Glutamate 5-kinase [Escherichia coli F11], gi\|191171439\|ref\|... sp\|B7UJD0\|PROB_ECO27 - Glutamate 5-kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=proB PE=3 SV=1 PROB_SHIBS - Glutamate 5-kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=proB PE=3 SV=1 gi\|89107115, gi\|... - gi\|89107115\|ref\|AP_000895.1\| gamma-glutamate kinase [Escherichia coli str. K-12 substr. W3110], gi\|8... PROB_SHISS - Glutamate 5-kinase OS=Shigella sonnei (strain Ss046) GN=proB PE=3 SV=1 PROB_SHIDS - Glutamate 5-kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=proB PE=3 SV=1 gi\|194438223, gi... - gi\|83586318\|ref\|ZP_00924953.1\| COG0263: Glutamate 5-kinase [Escherichia coli 101-1], gi\|194438223\|re... PROB_ECO55 - Glutamate 5-kinase OS=Escherichia coli (strain 55989 / EAEC) GN=proB PE=3 SV=1 PROB_SHIB3 - Glutamate 5-kinase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proB PE=3 SV=1 PROB_ECO81 - Glutamate 5-kinase OS=Escherichia coli O81 (strain ED1a) GN=proB PE=3 SV=1 PROB_ECOLU - Glutamate 5-kinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=proB PE=3 SV=1 gi\|194432626, gi... - gi\|83570390\|ref\|ZP_00921835.1\| COG0263: Glutamate 5-kinase [Shigella dysenteriae 1012], gi\|194432626... PROB_ECO7I - Glutamate 5-kinase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=proB PE=3 SV=1 gi\|194414335, gi... - gi\|75211187\|ref\|ZP_00711294.1\| COG0263: Glutamate 5-kinase [Escherichia coli B171], gi\|194427565\|ref... gi\|75231158, gi\|... - gi\|75231158\|ref\|ZP_00717580.1\| COG0263: Glutamate 5-kinase [Escherichia coli B7A], gi\|191165764\|ref\|... PROB_ECO24 - Glutamate 5-kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=proB PE=3 SV=1 PROB_ECOHS - Glutamate 5-kinase OS=Escherichia coli O9:H4 (strain HS) GN=proB PE=3 SV=1 gi\|227838343, gi... - gi\|227884742\|ref\|ZP_04002547.1\| glutamate 5-kinase [Escherichia coli 83972], gi\|227838343\|gb\|EEJ4880... PROB_ECOLI - Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK) - Escherichia coli gi\|237707739, gi... - gi\|237707739\|ref\|ZP_04538220.1\| glutamate 5-kinase [Escherichia sp. 3_2_53FAA], gi\|226898949\|gb\|EEH8... PROB_ECOBW - Glutamate 5-kinase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=proB PE=3 SV=1 gi\|242376074, gi... - gi\|251783801\|ref\|YP_002998105.1\| hypothetical protein B21_00242 [Escherichia coli BL21], gi\|24237607... gi\|253325775, gi... - gi\|254287161\|ref\|YP_003052909.1\| gamma-glutamyl kinase [Escherichia coli BL21(DE3)], gi\|253976468\|gb... gi\|254160358, gi... - gi\|254160358\|ref\|YP_003043466.1\| gamma-glutamyl kinase [Escherichia coli B str. REL606], gi\|25397225... gi\|254791402, gi... - gi\|254791402\|ref\|YP_003076239.1\| gamma-glutamate kinase [Escherichia coli O157:H7 str. TW14359], gi\|... PROB_ECOL6 - Glutamate 5-kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=proB PE=3 SV=1 gi\|168757270, gi... - gi\|189355741\|gb\|EDU74160.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4401], gi\|168757270\|... gi\|168750226, gi... - gi\|188015601\|gb\|EDU53723.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4113], gi\|168750226\|... gi\|168770040, gi... - gi\|189361093\|gb\|EDU79512.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4486], gi\|168770040\|... gi\|189366368, gi... - gi\|189366368\|gb\|EDU84784.1\| glutamate 5-kinase [Escherichia coli O157:H7 str. EC4501], gi\|168763483\|...	1.0E-91	[1..367]	[1..367]
PROB_SALPA - Glutamate 5-kinase OS=Salmonella paratyphi A GN=proB PE=3 SV=1 PROB_SALPK - Glutamate 5-kinase OS=Salmonella paratyphi A (strain AKU_12601) GN=proB PE=3 SV=1 PROB_SALPA - Glutamate 5-kinase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=proB PE=3 SV=1	2.0E-91	[1..367]	[1..367]
PROB_THETN - Glutamate 5-kinase OS=Thermoanaerobacter tengcongensis GN=proB PE=3 SV=1 gi\|254479125, gi... - gi\|254479125\|ref\|ZP_05092476.1\| glutamate 5-kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348... PROB_CALS4 - Glutamate 5-kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 110...	2.0E-91	[6..366]	[2..363]
gi\|4902977, gi\|42497 - dbj\|BAA77911.1\| Glutamate 5-kinase (EC 2.7.2.11). [Escherichia coli], gi\|42497\|emb\|CAA25363.1\| unnam...	8.0E-91	[1..367]	[1..367]
PROB_SYNP6 - Glutamate 5-kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=proB PE=3 SV...	2.0E-89	[5..366]	[6..369]
PROB_SYNE7 - Glutamate 5-kinase OS=Synechococcus elongatus (strain PCC 7942) GN=proB PE=3 SV=1	3.0E-89	[5..366]	[3..366]
PROB_NOSS1 - Glutamate 5-kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=proB PE=3 SV=2	5.0E-89	[5..366]	[12..377]
gi\|238795602, gi... - gi\|77962912\|ref\|ZP_00826727.1\| COG0263: Glutamate 5-kinase [Yersinia mollaretii ATCC 43969], gi\|2387...	7.0E-89	[1..366]	[1..366]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSQTLVVK LGTSVLTGGS RRLNRAHIVE LVRQCAQLHA AGHRIVIVTS GAIAAGREHL  60
   61 GYPELPATIA SKQLLAAVGQ SRLIQLWEQL FSIYGIHIGQ MLLTRADMED RERFLNARDT 120
  121 LRALLDNHIV PVINENDAVA TAEIKVGDND NLSALAAILA GADKLLLLTD QQGLFTADPR 180
  181 SNPQAELIKD VYGVDDALRS IAGDSVSGLG TGGMSTKLQA ADVACRAGID TIIASGSKPG 240
  241 VIGDVMEGIS VGTRFHAQAS PLENRKRWIF GAPPAGEITV DEGATAAMLE RGSSLLPKGI 300
  301 KSVTGNFSRG EVIRICNLQG RDIAHGVSRY NSDALRRIAG HHSQQIDAIL GYEYGPVAVH 360
  361 RDDMITR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.30103
Match:	2j5tA
Description:	No description for 2j5tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits