YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052446
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052446.

Description	E-value	Query Range	Subject Range
RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB... RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi A GN=rihA PE=3 SV=1 RIHA_SALPK - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=ri...	0.0	[1..311]	[1..311]
gi\|237707382, gi... - gi\|237707382\|ref\|ZP_04537863.1\| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3... gi\|26107024, gi\|... - gi\|26246625\|ref\|NP_752665.1\| Hypothetical protein ybeK [Escherichia coli CFT073], gi\|26107024\|gb\|AAN... gi\|91209692, gi\|... - gi\|91209692\|ref\|YP_539678.1\| hypothetical protein YbeK [Escherichia coli UTI89], gi\|91071266\|gb\|ABE0...	0.0	[1..311]	[12..322]
RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhimurium (strain LT2 / SGSC1412 /... gi\|167990670, gi... - gi\|205330855\|gb\|EDZ17619.1\| inosine-uridine preferring nucleoside hydrolase [Salmonella enterica sub... RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhimurium GN=rihA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rihA] [protein=ribonucleoside hydrolase 1] [protein_id=YP_005236376.1] [location=complement(72... RIHA_SALTY - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella typhimurium GN=rihA PE=3 SV=1	0.0	[1..311]	[1..311]
RIHA_SALCH - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella choleraesuis (strain SC-B67) GN=rihA... RIHA_SALCH - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella choleraesuis GN=rihA PE=3 SV=1 RIHA_SALCH - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella choleraesuis GN=rihA PE=3 SV=1	0.0	[1..311]	[1..311]
RIHA_ECOLI, YBEK... - (P41409) Hypothetical protein ybeK, Pyrimidine-specific ribonucleoside hydrolase rihA (EC 3.2.-.-) (... RIHA_ECOBW - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli (strain K12 / MC4100 / BW2952)... EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific gi\|170080230, gi... - gi\|170080331\|ref\|YP_001729651.1\| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. DH10... gi\|194439885, gi... - gi\|83584753\|ref\|ZP_00923416.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Escherichia coli... gi\|4062271, gi\|8... - gi\|89107520\|ref\|AP_001300.1\| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. W3110], ... gi\|253972630, gi... - gi\|254160729\|ref\|YP_003043837.1\| ribonucleoside hydrolase 1 [Escherichia coli B str. REL606], gi\|253... gi\|253976824, gi... - gi\|254287517\|ref\|YP_003053265.1\| ribonucleoside hydrolase 1 [Escherichia coli BL21(DE3)], gi\|2539768... gi\|242376421, gi... - gi\|251784148\|ref\|YP_002998452.1\| hypothetical protein B21_00606 [Escherichia coli BL21], gi\|24237642... EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific	0.0	[1..311]	[1..311]
RIHA_SHIB3 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella boydii serotype 18 (strain CDC 3083-94...	0.0	[1..311]	[1..311]
gi\|168786501, gi... - gi\|189373662\|gb\|EDU92078.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|168802439, gi... - gi\|189375581\|gb\|EDU93997.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|195939389 - gi\|195939389\|ref\|ZP_03084771.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. EC4024] gi\|208725560, gi... - gi\|208805759\|ref\|ZP_03248096.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|208815054, gi... - gi\|208815054\|ref\|ZP_03256233.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|208822967, gi... - gi\|208822967\|ref\|ZP_03263285.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... RIHA_ECO5E - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)... gi\|217320943, gi... - gi\|217324722\|ref\|ZP_03440806.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|188013882, gi... - gi\|188013882\|gb\|EDU52004.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|13360148, gi\|... - gi\|15829944\|ref\|NP_308717.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|189354849, gi... - gi\|189354849\|gb\|EDU73268.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|189365377, gi... - gi\|189365377\|gb\|EDU83793.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|189363460, gi... - gi\|189363460\|gb\|EDU81879.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|187767178, gi... - gi\|187767178\|gb\|EDU31022.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|168779142, gi... - gi\|189003131\|gb\|EDU72117.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|254591215, gi... - gi\|254791815\|ref\|YP_003076652.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. TW14359],... RIHA_ECO57 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 GN=rihA PE=3 SV=1 gi\|209776950, gi... - pir\|\|E85565 probable tRNA synthetase ybeK [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|194417295, gi... - gi\|83569108\|ref\|ZP_00920568.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Shigella dysente... gi\|12513558, gi\|... - gi\|15800365\|ref\|NP_286377.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 EDL933], gi\|125135...	0.0	[1..311]	[1..311]
RIHA_ECO45 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN... RIHA_ECOK1 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O1:K1 / APEC GN=rihA PE=3 SV=1 gi\|227838462, gi... - gi\|227884376\|ref\|ZP_04002181.1\| ribosylpyrimidine nucleosidase [Escherichia coli 83972], gi\|22783846... RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70... gi\|162138473 - gi\|162138473\|ref\|YP_539678.2\| ribonucleoside hydrolase 1 [Escherichia coli UTI89] RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Escherichia coli O6 GN=rihA PE=3 SV=2	0.0	[1..311]	[1..311]
gi\|30040406, gi\|... - gi\|30062161\|ref\|NP_836332.1\| ribonucleoside hydrolase 1 [Shigella flexneri 2a str. 2457T], gi\|300404... RIHA_SHIF8 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella flexneri serotype 5b (strain 8401) GN=... gi\|56479705, gi\|... - gi\|56479705\|ref\|NP_706560.2\| ribonucleoside hydrolase 1 [Shigella flexneri 2a str. 301], gi\|56383256... RIHA_SHIFL - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella flexneri GN=rihA PE=3 SV=4	0.0	[1..311]	[1..311]
RIHA_SHISS - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella sonnei (strain Ss046) GN=rihA PE=3 SV=... RIHA_ECO8A - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O8 (strain IAI1) GN=rihA PE=3 ...	0.0	[1..311]	[1..311]

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Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPIIIDCD PGHDDAIALV LALASPELEV KAITSSAGNQ TPEKTLRNVL RMLTLLKRPD  60
   61 IPVAGGAVKP LMRELIIADN VHGESGLDGP ALPEPSFAPQ SGTAVELMAK TLRESAQPVT 120
  121 IVSTGPQTNV ALLLNSHPEL HTKIARIVIM GGAMALGNWT PAAEFNIYVD PEAAEIVFQS 180
  181 GIPVVMAGLD VTHKAQIHAA DIERFRDIGN PISTIVAELL DFFFEYHKDE KWGFVGAPLH 240
  241 DPCTIAWLLK PEIFTTVERW VGVETQGKYT QGMTVVDYYF LTGNKPNATV MVDVDRQGFV 300
  301 DLLAERLQYY A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1yoeA
Description:	Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits