YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220952160
Organism:	synthetic construct
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220952160.

Description	E-value	Query Range	Subject Range
gi\|39943160, gi\|... - gi\|39943160\|ref\|XP_361117.1\| hypothetical protein MG03660.4 [Magnaporthe grisea 70-15], gb\|EAA52065....	156.0	[0..4]	[92..12]
gi\|40741617, gi\|... - gi\|67537190\|ref\|XP_662369.1\| hypothetical protein AN4765.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	151.0	[0..3]	[91..10]
BCN92_DROSU - Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1	127.0	[0..1]	[92..1]
gi\|125980855, gi... - gi\|54642756\|gb\|EAL31501.1\| GA17638 [Drosophila pseudoobscura pseudoobscura], gi\|125980855\|ref\|XP_001... gi\|54642756\|gb\|E... - GA17638-PA [Drosophila pseudoobscura], GA17638 [Drosophila pseudoobscura pseudoobscura]	125.0	[0..1]	[92..1]
gi\|50734067 - gi\|50734067\|ref\|XP_418962.1\| PREDICTED: similar to chromosome 6 open reading frame 149; CGI-203 prot...	123.0	[0..2]	[82..126]
gi\|71000545, gi\|... - gi\|71000545\|ref\|XP_754956.1\| Complex 1 protein (LYR family) family [Aspergillus fumigatus Af293], gi...	118.0	[0..3]	[91..10]
gi\|46105272, gi\|... - gi\|46105272\|ref\|XP_380440.1\| hypothetical protein FG00264.1 [Gibberella zeae PH-1], gi\|42546831\|gb\|E...	118.0	[0..4]	[92..12]
LYRM4 - LYR motif containing 4	118.0	[0..2]	[84..4]
LYRM4_MOUSE - LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1	117.0	[0..2]	[85..4]
gi\|16306961 - gi\|16306961\|gb\|AAH09552.1\| LYR motif containing 4 [Homo sapiens] gi\|190689721, gi... - gi\|190691085\|gb\|ACE87317.1\| LYR motif containing 4 protein [synthetic construct], gi\|190689721\|gb\|AC... gi\|55625814 - gi\|55625814\|ref\|XP_518217.1\| PREDICTED: hypothetical protein LOC57128 isoform 2 [Pan troglodytes]	116.0	[0..2]	[84..4]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRRQAITL YRNLLRESEK LPSYNFRMYA ARKIRDTFRA NRSTRDFAEI DRQMAEGQQN  60
   61 LELIRRQVII GHLYSADKLV IENKKTLKPS DD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.958607
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits