YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|219933076, gi...
Organism:	Mycobacterium leprae Br4923
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|219933076, gi....

Description	E-value	Query Range	Subject Range
gi\|4587113 - gi\|4587113\|dbj\|BAA76622.1\| RpoT [Mycobacterium leprae]	356.0	[0..1]	[574..1]
gi\|32491217, gi\|... - gi\|32491217\|ref\|NP_871471.1\| hypothetical protein WGLp468 [Wigglesworthia glossinidia endosymbiont o...	354.0	[0..53]	[574..54]
gi\|33519536, gi\|... - gi\|33519536\|ref\|NP_878368.1\| RNA polymerase sigma-70 factor [Candidatus Blochmannia floridanus], gi\|...	350.0	[0..60]	[574..57]
gi\|77974118 - gi\|77974118\|ref\|ZP_00829660.1\| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)...	345.0	[0..45]	[574..54]
gi\|45437587, gi\|... - gi\|45442721\|ref\|NP_994260.1\| RNA polymerase sigma factor RpoD [Yersinia pestis biovar Microtus str. ...	344.0	[0..45]	[574..51]
gi\|21960500, gi\|... - gi\|22127411\|ref\|NP_670834.1\| RNA polymerase sigma factor RpoD [Yersinia pestis KIM], gi\|21960500\|gb\|...	344.0	[0..45]	[574..52]
gi\|71795952, gi\|... - gi\|71891846\|ref\|YP_277575.1\| RNA polymerase sigma-70 factor [Candidatus Blochmannia pennsylvanicus s...	344.0	[0..45]	[574..32]
gi\|238719206, gi... - gi\|77962309\|ref\|ZP_00826131.1\| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)...	343.0	[0..45]	[574..54]
RPOD_BUCBP - RNA polymerase sigma factor RpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rp... RPOD_BUCBP - RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoD PE=3 SV=1	343.0	[0..57]	[574..54]
gi\|77977904 - gi\|77977904\|ref\|ZP_00833342.1\| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)...	342.0	[0..45]	[574..54]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQSRRVPPL QWLSAVARPI ARVLTLISTP TFDIADTFGY ACPNPPEVSP TEGVYVVATK  60
   61 TSPATGQPVK RTATKTPATP AKRSTTKAAN GSAPTKRATS TASRATKSTT PPKASGASDA 120
  121 AKKARTSVKS VDTKAPSAQD HTTKASAAKD TLNDPEATLN TLDSDAT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.45
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [168-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADDLDAEPDL DVEPSEDIDI DIEAADLGLD DLEDDDVVTD IEPGETEDGE ATAATKTDEA  60
   61 STDDDEEIVE PTEKDKASGD FVWDEDESEA LRQARKDAEL TASADSVRAY LKQIGKVALL 120
  121 NAEEEVELAK RIEAGLYATQ LMTELSERGT KLPTAQRRDM MWICRDGDRA KNHLLEANLR 180
  181 LVVSLAKRYT GRGMAFLDLI QEGNLGLIRA VEKFDYTKGY KFSTYATWWI RQAITRAMAD 240
  241 QARTIRIPVH MVEVINKLGR IQRELLQDLG REPTPEELAK EMDITPEKVL EIQQYAREPI 300
  301 SLDQTIGDEG DSQLGDFIED SEAVVAVDAV SFTLLQDQLQ SVLETLSERE AGVVRLRFGL 360
  361 TDGQPRTLDE IGQVYGVTRE RIRQIESKTM SKLRHPSRSQ VLRDYLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.221849
Match:	1iw7F
Description:	Sigma70
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits