YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14517383, gi\|...
Organism:	Arabidopsis thaliana
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14517383, gi|....

Description	E-value	Query Range	Subject Range
gi\|109506458, gi... - gi\|109507163\|ref\|XP_001064260.1\| PREDICTED: similar to zinc finger, matrin type 2 [Rattus norvegicus...	223.0	[0..1]	[202..118]
gi\|39969771, gi\|... - gi\|39969771\|ref\|XP_366276.1\| hypothetical protein MG10495.4 [Magnaporthe grisea 70-15], gb\|EAA46801....	212.0	[0..2]	[201..5]
gi\|47086675, gi\|... - gi\|47086675\|ref\|NP_997846.1\| zinc finger, matrin type 2 [Danio rerio], gi\|37595334\|gb\|AAQ94553.1\| z2...	195.0	[0..1]	[201..1]
gi\|115803248, gi... - gi\|115803248\|ref\|XP_785671.2\| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratu...	194.0	[0..15]	[201..402]
gi\|55715630, gi\|... - gi\|55715630\|gb\|AAH86293.1\| Zmat2-prov protein [Xenopus laevis], gi\|148231065\|ref\|NP_001088651.1\| zin...	191.0	[0..1]	[201..1]
gi\|50370210, gi\|... - gi\|52346154\|ref\|NP_001005119.1\| zinc finger, matrin type 2 [Xenopus (Silurana) tropicalis], gi\|50370...	190.0	[0..1]	[201..1]
gi\|113550269, gi... - gi\|34897240\|ref\|NP_909966.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|31249762\|g... gi\|125546314 - gi\|125546314\|gb\|EAY92453.1\| hypothetical protein OsI_14186 [Oryza sativa Indica Group]	189.0	[0..4]	[201..2]
gi\|114602176 - gi\|114602176\|ref\|XP_001140609.1\| PREDICTED: hypothetical protein [Pan troglodytes] tr\|G3I598\|G3I598... - Zinc finger matrin-type protein 2 OS=Cricetulus griseus GN=I79_018642 PE=4 SV=1 gi\|194219848 - gi\|194219848\|ref\|XP_001502341.2\| PREDICTED: similar to zinc finger, matrin type 2 [Equus caballus] tr\|G1SLE4\|G1SLE4... - pep:novel chromosome:oryCun2:3:22819773:22827697:1 gene:ENSOCUG00000004255 transcript:ENSOCUT0000000... ZMAT2 - zinc finger, matrin type 2 ENSCJAT00000031583 - null ZMAT2_MOUSE - Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1 gi\|73949322 - gi\|73949322\|ref\|XP_848938.1\| PREDICTED: similar to zinc finger, matrin type 2 isoform 1 [Canis famil... gi\|112362325, gi... - gi\|122692385\|ref\|NP_001073812.1\| zinc finger, matrin type 2 [Bos taurus], gi\|112362325\|gb\|AAI20368.1... gi\|109078923 - gi\|109078923\|ref\|XP_001086774.1\| PREDICTED: similar to zinc finger, matrin type 2 [Macaca mulatta] tr\|M3VWD5\|M3VWD5... - Zinc finger matrin-type 2 OS=Felis catus GN=ZMAT2 PE=4 SV=1	188.0	[0..1]	[202..1]
gi\|71895465, gi\|... - gi\|71895465\|ref\|NP_001026636.1\| zinc finger, matrin type 2 [Gallus gallus], gi\|53136119\|emb\|CAG32487...	187.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSNTTTGV DNTFRKKFDV EEFKERARER EKKESDRSKS RSKGPPVQRA PLKHRDYHVD  60
   61 LESRLGKTQV VTPVAPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQQAGYFCRV CDCVVKDSAN YLDHINGKKH QRALGMSMRV ERSSLEQVQE RFEVLKKRKA  60
   61 PGTFTEQDLD ERIRKQQEEE EELKRQRREK KKEKKKGKVV EEEPEMDPEV AEMMGFGGFG 120
  121 SSKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.54
Match:	1zu1A
Description:	Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits