YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190689559, gi...
Organism:	synthetic construct
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190689559, gi....

Description	E-value	Query Range	Subject Range
gi\|149057846, gi... - gi\|62662820\|ref\|XP_224947.3\| PREDICTED: similar to Proline synthetase co-transcribed bacterial homol...	3.0E-69	[1..275]	[1..275]
PROSC_MOUSE - Proline synthase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1	4.0E-69	[1..275]	[1..274]
gi\|114619663, gi... - gi\|114619663\|ref\|XP_001169823.1\| PREDICTED: proline synthetase co-transcribed homolog isoform 1 [Pan...	5.0E-69	[1..275]	[1..275]
gi\|109086147 - gi\|109086147\|ref\|XP_001089087.1\| PREDICTED: proline synthetase co-transcribed homolog [Macaca mulatt...	2.0E-68	[1..275]	[1..275]
PROSC_PONAB - Proline synthase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1 PROSC_PONPY - Proline synthetase co-transcribed bacterial homolog protein - Pongo pygmaeus (Orangutan)	8.0E-68	[1..275]	[1..275]
gi\|57097863 - gi\|57097863\|ref\|XP_539969.1\| PREDICTED: similar to Proline synthetase co-transcribed bacterial homol...	1.0E-65	[1..275]	[1..275]
PROSC_BOVIN - Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1	4.0E-63	[1..266]	[1..264]
gi\|153839183, gi... - gi\|153839183\|ref\|ZP_01991850.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28807626, gi\|... - gi\|28899390\|ref\|NP_798995.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633], gi\|28807626\|dbj\|BAC60879.1... gi\|28807626 - gi\|28807626\|dbj\|BAC60879.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633]	8.0E-59	[12..257]	[3..237]
gi\|91228687, gi\|... - gi\|91228687\|ref\|ZP_01262601.1\| FkuA [Vibrio alginolyticus 12G01], gi\|91187758\|gb\|EAS74076.1\| FkuA [V...	3.0E-57	[12..253]	[3..233]
Y090_HAEIN - UPF0001 protein HI_0090 OS=Haemophilus influenzae GN=HI_0090 PE=1 SV=1 Y090_HAEIN - UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_...	4.0E-57	[11..258]	[1..237]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRAGSMSAE LGVGCALRAV NERVQQAVAR RPRDLPAIQP RLVAVSKTKP ADMVIEAYGH  60
   61 GQRTFGENYV QELLEKASNP KILSLCPEIK WHFIGHLQKQ NVNKLMAVPN LFMLETVDSV 120
  121 KLADKVNSSW QRKGSPERLK VMVQINTSGE ESKHGLPPSE TIAIVEHINA KCPNLEFVGL 180
  181 MTIGSFGHDL SQGPNPDFQL LLSLREELCK KLNIPADQVE LSMGMSADFQ HAVEVGSTNV 240
  241 RIGSTIFGER DYSKKPTPDK CAADVKAPLE VAQEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1w8gA
Description:	No description for 1w8gA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits