YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161365675, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161365675, gi....

Description	E-value	Query Range	Subject Range
gi\|60468186 - gi\|60468186\|gb\|EAL66196.1\| hypothetical protein DDB0204910 [Dictyostelium discoideum] gi\|66812030, gi\|... - gi\|66812030\|ref\|XP_640194.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468186\|gb\|EAL...	3.0E-31	[4..301]	[213..510]
gi\|197364161, gi... - gi\|197364161\|ref\|YP_002143798.1\| hypothetical protein SSPA2957 [Salmonella enterica subsp. enterica ... gi\|56129488, gi\|... - gi\|56415231\|ref\|YP_152306.1\| hypothetical protein SPA3169 [Salmonella enterica subsp. enterica serov...	2.0E-28	[1..321]	[1..321]
gi\|110345016, gi... - gi\|110643424\|ref\|YP_671154.1\| transport protein YhbE [Escherichia coli 536], gi\|110345016\|gb\|ABG7125... gi\|215266572, gi... - gi\|215488500\|ref\|YP_002330931.1\| conserved inner membrane protein [Escherichia coli O127:H6 str. E23...	2.0E-28	[1..321]	[1..321]
gi\|91212606, gi\|... - gi\|91212606\|ref\|YP_542592.1\| transport protein YhbE [Escherichia coli UTI89], gi\|91074180\|gb\|ABE0906... gi\|26249767, gi\|... - gi\|26249767\|ref\|NP_755807.1\| putative transport protein YhbE [Escherichia coli CFT073], gi\|26110195\|... gi\|218429038, gi... - gi\|218691474\|ref\|YP_002399686.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|226899104, gi... - gi\|237706064\|ref\|ZP_04536545.1\| transporter YhbE [Escherichia sp. 3_2_53FAA], gi\|226899104\|gb\|EEH853... gi\|227887905, gi... - gi\|227887905\|ref\|ZP_04005710.1\| transporter [Escherichia coli 83972], gi\|227835301\|gb\|EEJ45767.1\| tr... gi\|218550467, gi... - gi\|218550467\|ref\|YP_002384258.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|115514602, gi... - gi\|117625478\|ref\|YP_858801.1\| hypothetical protein APECO1_32482 [Escherichia coli APEC O1], gi\|11551... gi\|218367023, gi... - gi\|218560254\|ref\|YP_002393167.1\| conserved hypothetical protein; putative inner membrane protein [Es...	4.0E-28	[1..321]	[1..321]
gi\|218362522, gi... - gi\|218555754\|ref\|YP_002388667.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218353621, gi... - gi\|218696889\|ref\|YP_002404556.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218371939, gi... - gi\|218701953\|ref\|YP_002409582.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218433901, gi... - gi\|218706804\|ref\|YP_002414323.1\| conserved hypothetical protein; putative inner membrane protein [Es... EG11499 - EamA family inner membrane putative transporter / EamA family predicted transporter, inner membrane ... gi\|189374090, gi... - gi\|189374090\|gb\|EDU92506.1\| putative transporter [Escherichia coli O157:H7 str. EC869], gi\|168786070... gi\|169753494, gi... - gi\|170018566\|ref\|YP_001723520.1\| hypothetical protein EcolC_0516 [Escherichia coli ATCC 8739], gi\|16... gi\|169890554, gi... - gi\|170082719\|ref\|YP_001732039.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170520146, gi... - gi\|170682428\|ref\|YP_001745456.1\| putative transporter [Escherichia coli SMS-3-5], gi\|170520146\|gb\|AC... gi\|188495311, gi... - gi\|188495311\|ref\|ZP_03002581.1\| putative transporter [Escherichia coli 53638], gi\|188490510\|gb\|EDU65... gi\|209913918, gi... - gi\|209920659\|ref\|YP_002294743.1\| hypothetical protein ECSE_3468 [Escherichia coli SE11], gi\|20991391... YHBE_SHIFL - Uncharacterized inner membrane transporter YhbE OS=Shigella flexneri GN=yhbE PE=3 SV=1 gi\|30064522, gi\|... - gi\|30064522\|ref\|NP_838693.1\| hypothetical protein S3442 [Shigella flexneri 2a str. 2457T], gi\|300427... gi\|24053656, gi\|... - gi\|24114473\|ref\|NP_708983.1\| hypothetical protein SF3224 [Shigella flexneri 2a str. 301], gi\|2405365... EG11499 - EamA family inner membrane putative transporter / EamA family predicted transporter, inner membrane ... YHBE_ECO57 - Uncharacterized inner membrane transporter YhbE OS=Escherichia coli O157:H7 GN=yhbE PE=3 SV=1 gi\|12517799, gi\|... - gi\|15803724\|ref\|NP_289758.1\| hypothetical protein Z4546 [Escherichia coli O157:H7 EDL933], gi\|125177... gi\|238902286, gi... - gi\|238902286\|ref\|YP_002928082.1\| conserved inner membrane protein [Escherichia coli BW2952], gi\|2388... gi\|110616598, gi... - gi\|110807050\|ref\|YP_690570.1\| hypothetical protein SFV_3214 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|242378727, gi... - gi\|251786454\|ref\|YP_003000758.1\| hypothetical protein B21_03000 [Escherichia coli BL21], gi\|24237872... gi\|254289876, gi... - gi\|254289876\|ref\|YP_003055624.1\| conserved inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|254038349, gi... - gi\|254038349\|ref\|ZP_04872407.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683997... gi\|253975027, gi... - gi\|254163126\|ref\|YP_003046234.1\| conserved inner membrane protein [Escherichia coli B str. REL606], ... gi\|13363536, gi\|... - gi\|15833317\|ref\|NP_312090.1\| hypothetical protein ECs4063 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|89109947, gi\|... - gi\|89109947\|ref\|AP_003727.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|157157359, gi... - gi\|75187990\|ref\|ZP_00701257.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami... gi\|157162668, gi... - gi\|75197133\|ref\|ZP_00707203.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami... gi\|74313721, gi\|... - gi\|74313721\|ref\|YP_312140.1\| hypothetical protein SSON_3332 [Shigella sonnei Ss046], gi\|73857198\|gb\|... gi\|82545578, gi\|... - gi\|82545578\|ref\|YP_409525.1\| hypothetical protein SBO_3198 [Shigella boydii Sb227], gi\|81246989\|gb\|A... gi\|194411735, gi... - gi\|75208508\|ref\|ZP_00708828.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami... YHBE_ECOLI - Inner membrane transport protein yhbE - Escherichia coli gi\|192926989, gi... - gi\|75256560\|ref\|ZP_00728190.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	4.0E-28	[1..321]	[1..321]
gi\|82778498, gi\|... - gi\|82778498\|ref\|YP_404847.1\| hypothetical protein SDY_3365 [Shigella dysenteriae Sd197], gi\|81242646...	4.0E-28	[1..321]	[1..321]
gi\|86162035, gi\|... - gi\|87122657\|ref\|ZP_01078533.1\| possible transporter, EamA family protein [Marinomonas sp. MED121], g...	7.0E-28	[4..315]	[523..829]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	1.0E-27	[21..300]	[420..697]
gi\|165919851, gi... - gi\|165928164\|ref\|ZP_02223996.1\| integral membrane protein [Yersinia pestis biovar Orientalis str. F1... gi\|165989705, gi... - gi\|166011321\|ref\|ZP_02232219.1\| integral membrane protein [Yersinia pestis biovar Antiqua str. E1979... gi\|166204781, gi... - gi\|166213986\|ref\|ZP_02240021.1\| integral membrane protein [Yersinia pestis biovar Antiqua str. B4200... gi\|167049240, gi... - gi\|167401215\|ref\|ZP_02306715.1\| integral membrane protein [Yersinia pestis biovar Antiqua str. UG05-... gi\|229839163, gi... - gi\|229839163\|ref\|ZP_04459322.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. PE... gi\|167420547, gi... - gi\|167420547\|ref\|ZP_02312300.1\| integral membrane protein [Yersinia pestis biovar Orientalis str. MG... gi\|229700430, gi... - gi\|229896652\|ref\|ZP_04511819.1\| putative membrane protein [Yersinia pestis Pestoides A], gi\|22970043... gi\|167057789, gi... - gi\|167423619\|ref\|ZP_02315372.1\| integral membrane protein [Yersinia pestis biovar Mediaevalis str. K... gi\|229899727, gi... - gi\|229899727\|ref\|ZP_04514868.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. In... gi\|149288924, gi... - gi\|153997287\|ref\|ZP_02022387.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149288924\|... gi\|145212502, gi... - gi\|145600806\|ref\|YP_001164882.1\| hypothetical protein YPDSF_3559 [Yersinia pestis Pestoides F], gi\|1... Q66F74\|Q66F74_YERPS - Putative amino acid efflux protein, DMT superfamily precursor - Yersinia pseudotuberculosis gi\|21957390, gi\|... - gi\|22124588\|ref\|NP_668011.1\| hypothetical protein y0674 [Yersinia pestis KIM], gi\|21957390\|gb\|AAM842... gi\|25511155 - pir\|\|AG0426 probable membrane protein YPO3510 [imported] - Yersinia pestis (strain CO92) gi\|51594818, gi\|... - gi\|51594818\|ref\|YP_069009.1\| DMT family amino acid efflux protein [Yersinia pseudotuberculosis IP 32... gi\|45435284, gi\|... - gi\|45440427\|ref\|NP_991966.1\| hypothetical protein YP_0573 [Yersinia pestis biovar Microtus str. 9100... gi\|108777062, gi... - gi\|229903889\|ref\|ZP_04519002.1\| putative membrane protein [Yersinia pestis Nepal516], gi\|229679659\|g... gi\|167470188 - gi\|167470188\|ref\|ZP_02334892.1\| integral membrane protein [Yersinia pestis FV-1] gi\|115349135, gi... - gi\|218930524\|ref\|YP_002348399.1\| hypothetical protein YPO3510 [Yersinia pestis CO92], gi\|16123656\|re... gi\|169752504, gi... - gi\|170025970\|ref\|YP_001722475.1\| hypothetical protein YPK_3755 [Yersinia pseudotuberculosis YPIII], ... gi\|186893827, gi... - gi\|186893827\|ref\|YP_001870939.1\| hypothetical protein YPTS_0496 [Yersinia pseudotuberculosis PB1/+],... gi\|117675045, gi... - gi\|77631463\|ref\|ZP_00794049.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami... gi\|165937532, gi... - gi\|89104080\|ref\|ZP_01176634.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami... gi\|108806058, gi... - gi\|108806058\|ref\|YP_649974.1\| hypothetical protein YPA_0060 [Yersinia pestis Antiqua], gi\|108777971\|...	8.0E-27	[2..319]	[4..321]
gi\|37528410, gi\|... - gi\|37528410\|ref\|NP_931755.1\| hypothetical protein plu4591 [Photorhabdus luminescens subsp. laumondii...	8.0E-27	[9..309]	[17..314]

Back

Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQAGIGIL LALTTAMCWG ALPIAMKQVL EVMEPSTIVF YRFLMASIGL GAILAVKRKL  60
   61 PPLRIFRKPR WLVLLAIATC GLFGNFILFS SSLQYLSPTA SQVIGQLSPV GMMVASVFIL 120
  121 KEKMRGTQVI GALMLLSGLV MFFNTSLIEI FTR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.408935
Match:	PF00892.11
Description:	No description for PF00892.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTDYTWGVIF GVGAAMVWVS YGVAQKVLLR RLASQQILFL LYTLCTIALL PLAKPMVIAQ  60
   61 LSDWQLACLI FCGLNTLVGY GALAEAMARW QAAQVSAIIT LTPLFTLLFS DLLSMAWPDF 120
  121 FARPMLNLLG YLGAFVVVAG AMYSAIGHRI WGGLRKHETV VSQPRSGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.15
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits