YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213999762
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213999762.

Description	E-value	Query Range	Subject Range
RS13_MARHV - 30S ribosomal protein S13 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	8.0E-42	[1..118]	[1..118]
RS13_PSEA7 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsM PE=3 SV=1	1.0E-41	[1..118]	[1..118]
gi\|49074668 - gi\|49074668\|gb\|AAT49419.1\| PA4241 [synthetic construct]	3.0E-41	[1..118]	[1..118]
RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|194548090, gi... - gi\|84318950\|ref\|ZP_00967362.1\| COG0099: Ribosomal protein S13 [Pseudomonas aeruginosa C3719], gi\|254... gi\|107103757 - gi\|107103757\|ref\|ZP_01367675.1\| hypothetical protein PaerPA_01004828 [Pseudomonas aeruginosa PACS2] RS13_PSEA8 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsM PE=3 SV=1 RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa GN=rpsM PE=3 SV=1 RS13_PSEAB - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsM PE=3 SV=1	4.0E-41	[1..118]	[1..118]
gi\|67157030, gi\|... - gi\|67157030\|ref\|ZP_00418392.1\| Ribosomal protein S13 [Azotobacter vinelandii AvOP], ref\|ZP_00090924.... RS13_AZOVD - 30S ribosomal protein S13 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsM PE=3 SV=1	6.0E-41	[1..118]	[1..118]
RS13_MANSM - 30S ribosomal protein S13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsM PE=3 SV=1	6.0E-41	[1..118]	[1..118]
RS13_PASMU - 30S ribosomal protein S13 OS=Pasteurella multocida (strain Pm70) GN=rpsM PE=3 SV=1 RS13_PASMU - 30S ribosomal protein S13 OS=Pasteurella multocida GN=rpsM PE=3 SV=1	7.0E-41	[1..118]	[1..118]
RS13_PSEPF - 30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsM PE=3 SV=1	8.0E-41	[1..118]	[1..118]
RS13_PSEF5 - 30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsM PE=3 SV=1 tr\|F2KLW9\|F2KLW9... - 30S ribosomal protein S13 OS=Pseudomonas brassicacearum (strain NFM421) GN=rpsM PE=3 SV=1	1.0E-40	[1..118]	[1..118]
RS13_CHRSD - 30S ribosomal protein S13 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 137...	1.0E-40	[1..118]	[1..118]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIAGINIP DQKHAVIALT SIYGVGKTRS KAILAAAGIA ENVKISELSE EQIDTLRDEV  60
   61 AKFVVEGDLR REISMSIKRL MDLGCYRGLR HRRGLPVRGQ RTKTNARTRK GPCKPIKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	1vs5M
Description:	No description for 1vs5M was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75987008608357	bayes_pls_golite062009
structural molecule activity	9.18430883932738	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: