YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205327899, gi...
Organism:	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205327899, gi....

Description	E-value	Query Range	Subject Range
gi\|22219064 - gi\|22219064\|pdb\|1KON\|A Chain A, Crystal Structure Of E.Coli Yebc	0.0	[1..246]	[4..249]
gi\|15802277, gi\|... - gi\|15802277\|ref\|NP_288301.1\| hypothetical protein Z2916 [Escherichia coli O157:H7 EDL933], gi\|125159... YEBC_ECOL6 - Probable transcriptional regulatory protein YebC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... YEBC_ECOL6 - UPF0082 protein yebC OS=Escherichia coli O6 GN=yebC PE=3 SV=1 YEBC_ECO57 - Probable transcriptional regulatory protein YebC OS=Escherichia coli O157:H7 GN=yebC PE=3 SV=1 gi\|227885708, gi... - gi\|227885708\|ref\|ZP_04003513.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783728... gi\|226900575, gi... - gi\|237705818\|ref\|ZP_04536299.1\| yebC [Escherichia sp. 3_2_53FAA], gi\|226900575\|gb\|EEH86834.1\| yebC [... gi\|242377585, gi... - gi\|251785312\|ref\|YP_002999616.1\| hypothetical protein B21_01823 [Escherichia coli BL21], gi\|24237758... gi\|254288712, gi... - gi\|254288712\|ref\|YP_003054460.1\| hypothetical protein ECD_01835 [Escherichia coli BL21(DE3)], gi\|253... gi\|115513140, gi... - gi\|117624016\|ref\|YP_852929.1\| hypothetical protein APECO1_914 [Escherichia coli APEC O1], gi\|1155131... gi\|254161924, gi... - gi\|254161924\|ref\|YP_003045032.1\| hypothetical protein ECB_01835 [Escherichia coli B str. REL606], gi... gi\|254592888, gi... - gi\|254793488\|ref\|YP_003078325.1\| hypothetical protein ECSP_2438 [Escherichia coli O157:H7 str. TW143... gi\|75511835, gi\|... - gi\|75511835\|ref\|ZP_00734453.1\| COG0217: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|75239715, gi\|... - gi\|75239715\|ref\|ZP_00723678.1\| COG0217: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|157161333, gi... - gi\|75195929\|ref\|ZP_00705999.1\| COG0217: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|157078967, gi... - gi\|75190893\|ref\|ZP_00704160.1\| COG0217: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|209767438, gi... - pir\|\|B85799 hypothetical protein yebC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|170683235, gi... - gi\|170683235\|ref\|YP_001743380.1\| hypothetical protein EcSMS35_1322 [Escherichia coli SMS-3-5], gi\|17... gi\|168801900, gi... - gi\|189376041\|gb\|EDU94457.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208810508, gi... - gi\|208810508\|ref\|ZP_03252384.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|195940290 - gi\|195940290\|ref\|ZP_03085672.1\| hypothetical protein EscherichcoliO157_28499 [Escherichia coli O157:... gi\|208820490, gi... - gi\|208820490\|ref\|ZP_03260810.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|208731253, gi... - gi\|208816910\|ref\|ZP_03258030.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|215265149, gi... - gi\|215487077\|ref\|YP_002329508.1\| hypothetical protein E2348C_1989 [Escherichia coli O127:H6 str. E23... gi\|209400343, gi... - gi\|209400343\|ref\|YP_002270947.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 ... gi\|188017405, gi... - gi\|188017405\|gb\|EDU55527.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168762342, gi... - gi\|189367318\|gb\|EDU85734.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189355163, gi... - gi\|189355163\|gb\|EDU73582.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|187768083, gi... - gi\|187768083\|gb\|EDU31927.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168770847, gi... - gi\|189360282\|gb\|EDU78701.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189370673, gi... - gi\|189370673\|gb\|EDU89089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168783164, gi... - gi\|188999493\|gb\|EDU68479.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|13362042, gi\|... - gi\|15831828\|ref\|NP_310601.1\| hypothetical protein ECs2574 [Escherichia coli O157:H7 str. Sakai], gi\|... YEBC_ECOL5 - Probable transcriptional regulatory protein YebC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) ... YEBC_ECOUT - Probable transcriptional regulatory protein YebC OS=Escherichia coli (strain UTI89 / UPEC) GN=yebC P... gi\|218356116, gi... - gi\|218548575\|ref\|YP_002382366.1\| hypothetical protein EFER_1208 [Escherichia fergusonii ATCC 35469],... gi\|217318093, gi... - gi\|217328746\|ref\|ZP_03444827.1\| conserved hypothetical protein TIGR01033 [Escherichia coli O157:H7 s... gi\|218558729, gi... - gi\|218558729\|ref\|YP_002391642.1\| hypothetical protein ECS88_1922 [Escherichia coli S88], gi\|21836549... gi\|218361220, gi... - gi\|218554452\|ref\|YP_002387365.1\| hypothetical protein ECIAI1_1951 [Escherichia coli IAI1], gi\|218361... gi\|218695430, gi... - gi\|218695430\|ref\|YP_002403097.1\| hypothetical protein EC55989_2043 [Escherichia coli 55989], gi\|2183... gi\|218689802, gi... - gi\|218689802\|ref\|YP_002398014.1\| hypothetical protein ECED1_2069 [Escherichia coli ED1a], gi\|2184273... gi\|218705365, gi... - gi\|218705365\|ref\|YP_002412884.1\| hypothetical protein ECUMN_2162 [Escherichia coli UMN026], gi\|21843... gi\|218369550, gi... - gi\|218699564\|ref\|YP_002407193.1\| hypothetical protein ECIAI39_1185 [Escherichia coli IAI39], gi\|2183...	0.0	[1..246]	[1..246]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	0.0	[1..246]	[1..247]
Y433_HAEI8 - Probable transcriptional regulatory protein NTHI0433 OS=Haemophilus influenzae (strain 86-028NP) GN=... Y4390_HAEIG - Probable transcriptional regulatory protein CGSHiGG_04390 OS=Haemophilus influenzae (strain PittGG) ... Y1480_HAEIE - Probable transcriptional regulatory protein CGSHiEE_01480 OS=Haemophilus influenzae (strain PittEE) ... gi\|145640259 - gi\|145640259\|ref\|ZP_01795843.1\| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae R3021] gi\|145272367, gi... - gi\|145638772\|ref\|ZP_01794381.1\| dATP pyrophosphohydrolase [Haemophilus influenzae PittII], gi\|145272... gi\|144986761, gi... - gi\|145632566\|ref\|ZP_01788300.1\| hypothetical protein CGSHi3655_02089 [Haemophilus influenzae 3655], ... gi\|144979135, gi... - gi\|145628665\|ref\|ZP_01784465.1\| Holliday junction resolvase [Haemophilus influenzae 22.1-21], gi\|144... Y315_HAEIN - UPF0082 protein HI_0315 OS=Haemophilus influenzae GN=HI_0315 PE=1 SV=1 gi\|53732943 - gi\|53732943\|ref\|ZP_00155322.2\| COG0217: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|53733202 - gi\|53733202\|ref\|ZP_00156156.2\| COG0217: Uncharacterized conserved protein [Haemophilus influenzae R2... Y315_HAEIN - Probable transcriptional regulatory protein HI_0315 OS=Haemophilus influenzae (strain ATCC 51907 / D... gi\|145274845, gi... - gi\|145640259\|ref\|ZP_01795843.1\| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae R3021]... gi\|229810496, gi... - gi\|229846403\|ref\|ZP_04466511.1\| hypothetical protein CGSHi7P49H1_07020 [Haemophilus influenzae 7P49H...	0.0	[1..246]	[1..246]
YEBC_SALCH - UPF0082 protein yebC OS=Salmonella choleraesuis GN=yebC PE=3 SV=1 gi\|224468123, gi... - gi\|224583596\|ref\|YP_002637394.1\| hypothetical protein SPC_1814 [Salmonella enterica subsp. enterica ... YEBC_SALCH - UPF0082 protein yebC OS=Salmonella choleraesuis GN=yebC PE=3 SV=1 YEBC_SALCH - Probable transcriptional regulatory protein YebC OS=Salmonella choleraesuis (strain SC-B67) GN=yebC ...	0.0	[1..246]	[1..246]
gi\|238860331, gi... - gi\|238901079\|ref\|YP_002926875.1\| hypothetical protein BWG_1678 [Escherichia coli BW2952], gi\|2388603... YEBC_ECOLI - UPF0082 protein yebC - Escherichia coli YEBC_SHIFL - Probable transcriptional regulatory protein YebC OS=Shigella flexneri GN=yebC PE=3 SV=1 gi\|30063274, gi\|... - gi\|30063274\|ref\|NP_837445.1\| hypothetical protein S1940 [Shigella flexneri 2a str. 2457T], gi\|300415... EG11137 - UPF0082 family protein / Function unknown, expressed protein, UPF0082 family gi\|75255879, gi\|... - gi\|75255879\|ref\|ZP_00727618.1\| COG0217: Uncharacterized conserved protein [Escherichia coli E22], gi... YEBC_SHISS - Probable transcriptional regulatory protein YebC OS=Shigella sonnei (strain Ss046) GN=yebC PE=3 SV=1 gi\|169754719, gi... - gi\|170019791\|ref\|YP_001724745.1\| hypothetical protein EcolC_1768 [Escherichia coli ATCC 8739], gi\|16... EG11137 - UPF0082 family protein / Function unknown, expressed protein, UPF0082 family gi\|1736511, gi\|8... - gi\|89108704\|ref\|AP_002484.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173... gi\|169889355, gi... - gi\|170081520\|ref\|YP_001730840.1\| hypothetical protein ECDH10B_2005 [Escherichia coli str. K-12 subst... gi\|124498810, gi... - gi\|124531071\|ref\|ZP_01701456.1\| protein of unknown function DUF28 [Escherichia coli B], gi\|124498810... gi\|209912490, gi... - gi\|209919231\|ref\|YP_002293315.1\| hypothetical protein ECSE_2040 [Escherichia coli SE11], gi\|20991249... gi\|75209090, gi\|... - gi\|75209090\|ref\|ZP_00709345.1\| COG0217: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|195182926 - gi\|195182926\|dbj\|BAG66494.1\| hypothetical protein [Escherichia coli O111:H-] gi\|191168081, gi... - gi\|75228754\|ref\|ZP_00715367.1\| COG0217: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|194422011, gi... - gi\|83585535\|ref\|ZP_00924179.1\| COG0217: Uncharacterized conserved protein [Escherichia coli 101-1], ...	0.0	[1..246]	[1..246]
YEBC_SHIBS - Probable transcriptional regulatory protein YebC OS=Shigella boydii serotype 4 (strain Sb227) GN=yeb...	0.0	[1..246]	[1..246]
gi\|187428436, gi... - gi\|75175518\|ref\|ZP_00695734.1\| COG0217: Uncharacterized conserved protein [Shigella boydii BS512], g...	0.0	[1..246]	[1..246]
Y980_PASMU - UPF0082 protein PM0980 OS=Pasteurella multocida GN=PM0980 PE=3 SV=1 Y980_PASMU - Probable transcriptional regulatory protein PM0980 OS=Pasteurella multocida (strain Pm70) GN=PM0980 ...	0.0	[1..246]	[1..246]
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	0.0	[1..246]	[1..247]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSKWANT RHRKAAQDAK RGKIFTKIIR ELVTAAKLGG GDPDANPRLR AAVDKALANN  60
   61 MTRDTLNRAI ARGVGGDEDS NMETIIYEGY GPGGTAIMIE CLSDNRNRTV AEVRHAFSKC 120
  121 GGNLGTDGSV AYLFSKKGVI SFEKGDEDTI MEAALEAGAE DVVTYDDGAI DVYTAWEEMG 180
  181 KVRDALEAAG LKADSAEVSM IPSTKADMDA ETAPKLLRLI DMLEDCDDVQ EVYHNGEISD 240
  241 EVAATL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1konA
Description:	Hypothetical protein YebC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits