YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194471891, gi...
Organism:	Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194471891, gi....

Description	E-value	Query Range	Subject Range
RS13_MARHV - 30S ribosomal protein S13 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...	168.0	[0..1]	[118..1]
RS13_PSEA7 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsM PE=3 SV=1	166.0	[0..1]	[118..1]
gi\|49074668 - gi\|49074668\|gb\|AAT49419.1\| PA4241 [synthetic construct]	165.0	[0..1]	[118..1]
RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... gi\|194548090, gi... - gi\|84318950\|ref\|ZP_00967362.1\| COG0099: Ribosomal protein S13 [Pseudomonas aeruginosa C3719], gi\|254... gi\|107103757 - gi\|107103757\|ref\|ZP_01367675.1\| hypothetical protein PaerPA_01004828 [Pseudomonas aeruginosa PACS2] RS13_PSEA8 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsM PE=3 SV=1 RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa GN=rpsM PE=3 SV=1 RS13_PSEAB - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsM PE=3 SV=1	164.0	[0..1]	[118..1]
gi\|67157030, gi\|... - gi\|67157030\|ref\|ZP_00418392.1\| Ribosomal protein S13 [Azotobacter vinelandii AvOP], ref\|ZP_00090924.... RS13_AZOVD - 30S ribosomal protein S13 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsM PE=3 SV=1	163.0	[0..1]	[118..1]
RS13_MANSM - 30S ribosomal protein S13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsM PE=3 SV=1	163.0	[0..1]	[118..1]
RS13_PASMU - 30S ribosomal protein S13 OS=Pasteurella multocida (strain Pm70) GN=rpsM PE=3 SV=1 RS13_PASMU - 30S ribosomal protein S13 OS=Pasteurella multocida GN=rpsM PE=3 SV=1	163.0	[0..1]	[118..1]
RS13_PSEPF - 30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsM PE=3 SV=1	162.0	[0..1]	[118..1]
tr\|E4REZ7\|E4REZ7... - 30S ribosomal protein S13 OS=Pseudomonas putida (strain BIRD-1) GN=rpsM PE=3 SV=1 RS13_PSEPG - 30S ribosomal protein S13 OS=Pseudomonas putida (strain GB-1) GN=rpsM PE=3 SV=1 RS13_PSEPK - 30S ribosomal protein S13 OS=Pseudomonas putida (strain KT2440) GN=rpsM PE=3 SV=1 gi\|95108764 - gi\|95108764\|emb\|CAK13458.1\| 30S ribosomal protein S13 [Pseudomonas entomophila L48] tr\|I7B2M2\|I7B2M2... - 30S ribosomal protein S13 OS=Pseudomonas putida (strain DOT-T1E) GN=rpsM PE=3 SV=1 RS13_PSEP1 - 30S ribosomal protein S13 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsM PE=3 SV=1 RS13_PSEE4 - 30S ribosomal protein S13 OS=Pseudomonas entomophila (strain L48) GN=rpsM PE=3 SV=1	162.0	[0..1]	[118..1]
RS13_SACD2 - 30S ribosomal protein S13 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpsM...	162.0	[0..1]	[118..1]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIAGINIP DQKHAVIALT SIYGVGKTRS KAILAAAGIA ENVKISELSE EQIDTLRDEV  60
   61 AKFVVEGDLR REISMSIKRL MDLGCYRGLR HRRGLPVRGQ RTKTNARTRK GPRKPIKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1vs5M
Description:	No description for 1vs5M was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75987008608357	bayes_pls_golite062009
structural molecule activity	9.18430883932738	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: