YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|194471891, gi...
Organism: Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Length: 118 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194471891, gi....

Description E-value Query
Range
Subject
Range
RS13_MARHV - 30S ribosomal protein S13 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT...
168.0 [0..1] [118..1]
RS13_PSEA7 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsM PE=3 SV=1
166.0 [0..1] [118..1]
gi|49074668 - gi|49074668|gb|AAT49419.1| PA4241 [synthetic construct]
165.0 [0..1] [118..1]
RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1...
gi|194548090, gi... - gi|84318950|ref|ZP_00967362.1| COG0099: Ribosomal protein S13 [Pseudomonas aeruginosa C3719], gi|254...
gi|107103757 - gi|107103757|ref|ZP_01367675.1| hypothetical protein PaerPA_01004828 [Pseudomonas aeruginosa PACS2]
RS13_PSEA8 - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsM PE=3 SV=1
RS13_PSEAE - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa GN=rpsM PE=3 SV=1
RS13_PSEAB - 30S ribosomal protein S13 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsM PE=3 SV=1
164.0 [0..1] [118..1]
gi|67157030, gi|... - gi|67157030|ref|ZP_00418392.1| Ribosomal protein S13 [Azotobacter vinelandii AvOP], ref|ZP_00090924....
RS13_AZOVD - 30S ribosomal protein S13 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsM PE=3 SV=1
163.0 [0..1] [118..1]
RS13_MANSM - 30S ribosomal protein S13 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsM PE=3 SV=1
163.0 [0..1] [118..1]
RS13_PASMU - 30S ribosomal protein S13 OS=Pasteurella multocida (strain Pm70) GN=rpsM PE=3 SV=1
RS13_PASMU - 30S ribosomal protein S13 OS=Pasteurella multocida GN=rpsM PE=3 SV=1
163.0 [0..1] [118..1]
RS13_PSEPF - 30S ribosomal protein S13 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsM PE=3 SV=1
162.0 [0..1] [118..1]
tr|E4REZ7|E4REZ7... - 30S ribosomal protein S13 OS=Pseudomonas putida (strain BIRD-1) GN=rpsM PE=3 SV=1
RS13_PSEPG - 30S ribosomal protein S13 OS=Pseudomonas putida (strain GB-1) GN=rpsM PE=3 SV=1
RS13_PSEPK - 30S ribosomal protein S13 OS=Pseudomonas putida (strain KT2440) GN=rpsM PE=3 SV=1
gi|95108764 - gi|95108764|emb|CAK13458.1| 30S ribosomal protein S13 [Pseudomonas entomophila L48]
tr|I7B2M2|I7B2M2... - 30S ribosomal protein S13 OS=Pseudomonas putida (strain DOT-T1E) GN=rpsM PE=3 SV=1
RS13_PSEP1 - 30S ribosomal protein S13 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsM PE=3 SV=1
RS13_PSEE4 - 30S ribosomal protein S13 OS=Pseudomonas entomophila (strain L48) GN=rpsM PE=3 SV=1
162.0 [0..1] [118..1]
RS13_SACD2 - 30S ribosomal protein S13 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpsM...
162.0 [0..1] [118..1]

Back

Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIAGINIP DQKHAVIALT SIYGVGKTRS KAILAAAGIA ENVKISELSE EQIDTLRDEV  60
   61 AKFVVEGDLR REISMSIKRL MDLGCYRGLR HRRGLPVRGQ RTKTNARTRK GPRKPIKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1vs5M
Description: No description for 1vs5M was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.75987008608357 bayes_pls_golite062009
structural molecule activity 9.18430883932738 bayes_pls_golite062009
catalytic activity 0.161830442565647 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle