YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208965780
Organism:	synthetic construct
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208965780.

Description	E-value	Query Range	Subject Range
gi\|109101918 - gi\|109101918\|ref\|XP_001118248.1\| PREDICTED: similar to 1,2-dihydroxy-3-keto-5-methylthiopentene diox...	1.0E-80	[1..179]	[142..320]
gi\|114575972 - gi\|114575972\|ref\|XP_001153347.1\| PREDICTED: similar to putative protein product of HMFT1638 isoform ...	5.0E-78	[1..179]	[60..238]
MTND3_ARATH - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1	6.0E-77	[1..177]	[12..188]
gi\|37791221 - gi\|37791221\|gb\|AAR03591.1\| ARD-like protein [Brassica juncea]	1.0E-76	[1..179]	[12..190]
gi\|22773257, gi\|... - gi\|22773257\|gb\|AAN06863.1\| Putative probable submergence induced, nickel-binding protein 2A [Oryza s... gi\|125542509 - gi\|125542509\|gb\|EAY88648.1\| hypothetical protein OsI_009881 [Oryza sativa (indica cultivar-group)]	4.0E-76	[1..175]	[61..242]
gi\|51555781 - gi\|51555781\|dbj\|BAD38646.1\| putative protein product of HMFT1638 [Homo sapiens]	7.0E-76	[1..179]	[15..193]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQAWYMDDA PGDPRQPHRP DPGRPVGLEQ LRRLGVLYWK LDADKYENDP ELEKIRRERN  60
   61 YSWMDIITIC KDKLPNYEEK IKMFYEEHLH LDDEIRYILD GSGYFDVRDK EDQWIRIFME 120
  121 KGDMVTLPAG IYHRFTVDEK NYTKAMRLFV GEPVWTAYNR PADHFEARGQ YVKFLAQTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1vr3A
Description:	Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits