YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168269680
Organism:	synthetic construct
Length:	538 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168269680.

Description	E-value	Query Range	Subject Range
DOLK_BOVIN - Dolichol kinase OS=Bos taurus GN=DOLK PE=2 SV=1	0.0	[1..525]	[1..525]
gi\|157822271, gi... - gi\|27706618\|ref\|XP_231121.1\| PREDICTED: similar to transmembrane protein 15 [Rattus norvegicus], gi\|...	0.0	[1..525]	[1..523]
DOLK_MOUSE - Dolichol kinase OS=Mus musculus GN=Dolk PE=1 SV=1	0.0	[1..525]	[1..521]
gi\|40789043 - gi\|40789043\|dbj\|BAA83046.2\| KIAA1094 protein [Homo sapiens]	0.0	[1..525]	[7..531]
CCDS6915.1_1 - null gi\|109110068 - gi\|109110068\|ref\|XP_001109312.1\| PREDICTED: transmembrane protein 15 [Macaca mulatta] gi\|164449283 - gi\|164449283\|gb\|ABY56110.1\| dolichol kinase (predicted) [Papio anubis]	0.0	[1..525]	[1..525]
gi\|57092051 - gi\|57092051\|ref\|XP_537820.1\| PREDICTED: similar to Transmembrane protein 15 [Canis familiaris]	0.0	[1..525]	[1..523]
gi\|50757350 - gi\|50757350\|ref\|XP_415482.1\| PREDICTED: similar to transmembrane protein 15 [Gallus gallus]	0.0	[16..537]	[2..522]
gi\|47215146 - gi\|47215146\|emb\|CAG12437.1\| unnamed protein product [Tetraodon nigroviridis]	0.0	[20..525]	[1..505]
gi\|49116007, gi\|... - gi\|49116007\|gb\|AAH73693.1\| MGC83595 protein [Xenopus laevis], gi\|148236147\|ref\|NP_001086008.1\| MGC83...	7.0E-99	[20..537]	[6..520]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRECPSPAP GPGAPLSGSV LAEAAVVFAV VLSIHATVWD RYSWCAVALA VQAFYVQYKW  60
   61 DRLLQQGSAV FQFRMSANSG LLPASMVMPL LGLVMKERCQ TAGNPFFERF GIVVAATGMA 120
  121 VALFSSVLAL GITRPVPTNT CVILGLAGGV IIYIMKHSLS VGEVIEVLEV LLIFVYLNMI 180
  181 LLYLLPRCF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPGEALLVLG GISFVLNQLI KRSLTLVESQ GDPVDFFLLV VVVGMVLMGI FFSTLFVFMD  60
   61 SGTWASSIFF HLMTCVLSLG VVLPWLHRLI RRNPLLWLLQ FLFQTDTRIY LLAYWSLLAT 120
  121 LACLVVLYQN A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [321-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRSSSESKKH QAPTIARKYF HLIVVATYIP GIIFDRPLLY VAATVCLAVF IFLEYVRYFR  60
   61 IKPLGHTLRS FLSLFLDERD SGPLILTHIY LLLGMSLPIW LIPRPCTQKG SLGGARALVP 120
  121 YAGVLAVGVG DTVASIFGST MGEIRWPGTK KTFEGTMTSI FAQIISVALI LIFDSGVDLN 180
  181 YSYAWILGSI STVSLLEAYT TQIDNLLLPL YLLILLMA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits