YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190689629, gi...
Organism:	synthetic construct
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190689629, gi....

Description	E-value	Query Range	Subject Range
gi\|109114982 - gi\|109114982\|ref\|XP_001087628.1\| PREDICTED: similar to ORM1-like 3 [Macaca mulatta]	5.0E-73	[1..153]	[183..335]
gi\|114145802, gi... - gi\|45478206\|gb\|AAS66274.1\| LRRGT00183 [Rattus norvegicus], gi\|114145802\|ref\|NP_001041362.1\| ORM1-lik...	1.0E-67	[1..153]	[28..180]
ORML1_MOUSE - ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1	3.0E-65	[1..153]	[1..153]
ORML1_XENLA - ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1	8.0E-65	[1..153]	[1..153]
ORMDL1 - ORM1-like 1 (S. cerevisiae) ORML1_PONAB - ORM1-like protein 1 OS=Pongo abelii GN=ORMDL1 PE=2 SV=1 gi\|114582244, gi... - gi\|114582250\|ref\|XP_001165741.1\| PREDICTED: ORM1-like 1 isoform 8 [Pan troglodytes], gi\|114582248\|re... ORML1_PONPY - ORM1-like protein 1 - Pongo pygmaeus (Orangutan) gi\|90079047 - gi\|90079047\|dbj\|BAE89203.1\| unnamed protein product [Macaca fascicularis] CCDS2301.1_1 - null gi\|109100358, gi... - gi\|109100360\|ref\|XP_001107686.1\| PREDICTED: ORM1-like 1 (S. cerevisiae) isoform 5 [Macaca mulatta], ...	2.0E-64	[1..153]	[1..153]
ORML1_BOVIN - ORM1-like protein 1 OS=Bos taurus GN=ORMDL1 PE=2 SV=1	2.0E-64	[1..153]	[1..153]
gi\|74004988 - gi\|74004988\|ref\|XP_848266.1\| PREDICTED: similar to ORM1-like 1 isoform 1 [Canis familiaris]	3.0E-64	[1..153]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGVAHSEV NPNTRVMNSR GIWLAYIILV GLLHMVLLSI PFFSIPVVWT LTNVIHNLAT  60
   61 YVFLHTVKGT PFETPDQGKA RLLTHWEQMD YGLQFTSSRK FLSISPIVLY LLASFYTKYD 120
  121 AAHFLINTAS LLSVLLPKLP QFHGVRVFGI NKY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.173925
Match:	PF04061.5
Description:	No description for PF04061.5 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits