YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48425513, gi\|...
Organism:	Escherichia coli
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48425513, gi|....

Description	E-value	Query Range	Subject Range
gi\|116221138, gi... - gi\|75820509\|ref\|ZP_00750554.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... tr\|A0A085RQ54\|A0... - DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE=3 SV=1 gi\|254291124, gi... - gi\|254291124\|ref\|ZP_04961921.1\| DNA gyrase, subunit B [Vibrio cholerae AM-19226], gi\|197751544\|ref\|Y...	298.0	[0..1]	[193..1]
gi\|1546916 - gi\|1546916\|emb\|CAA69221.1\| subunit B of DNA gyrase [Salmonella typhimurium] gi\|1546916\|emb\|C... - subunit B of DNA gyrase [Salmonella typhimurium]	298.0	[0..1]	[193..1]
GYRB_SALTY - DNA gyrase subunit B OS=Salmonella typhimurium GN=gyrB PE=3 SV=2 gi\|224470162, gi... - gi\|224585634\|ref\|YP_002639433.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar P... gi\|214001463 - gi\|214001463\|ref\|ZP_03412198.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Ty... gi\|213424954 - gi\|213424954\|ref\|ZP_03357704.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Ty... gi\|207859061, gi... - gi\|207859061\|ref\|YP_002245712.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar E... GYRB_SALTI - DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2 GYRB_SALTY - DNA gyrase subunit B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gyrB PE=1 SV... GYRB_SALTI - DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2 lcl\|NC_016856.1_... - [gene=gyrB] [protein=DNA gyrase subunit B] [protein_id=YP_005240101.1] [location=complement(4052548.... gi\|29143978, gi\|... - gi\|29143978\|ref\|NP_807320.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi... gi\|16762490 - gi\|16762490\|ref\|NP_458107.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi... gi\|238913088 - gi\|238913088\|ref\|ZP_04656925.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Te... gi\|205325567, gi... - gi\|205325567\|gb\|EDZ13406.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saint... GYRB_SALTY - DNA gyrase subunit B OS=Salmonella typhimurium GN=gyrB PE=3 SV=2 gi\|161616952, gi... - gi\|161616952\|ref\|YP_001590917.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar P... gi\|197240529, gi... - gi\|197262274\|ref\|ZP_03162348.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar S... gi\|194712574, gi... - gi\|194737072\|ref\|YP_002116779.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar ... gi\|194472695, gi... - gi\|194472695\|ref\|ZP_03078679.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar K... gi\|194449732, gi... - gi\|194449732\|ref\|YP_002047868.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar H... gi\|205354578, gi... - gi\|205354578\|ref\|YP_002228379.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar G... gi\|204322190, gi... - gi\|204928757\|ref\|ZP_03219956.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar J... gi\|199604199, gi... - gi\|200387101\|ref\|ZP_03213713.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar V... gi\|197938563, gi... - gi\|198244047\|ref\|YP_002217785.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar ... gi\|205338996, gi... - gi\|205338996\|gb\|EDZ25760.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heide... gi\|197291517, gi... - gi\|197291517\|gb\|EDY30869.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwa... gi\|168233389, gi... - gi\|205332584\|gb\|EDZ19348.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentu... gi\|205329403, gi... - gi\|205329403\|gb\|EDZ16167.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|194442844, gi... - gi\|194442844\|ref\|YP_002043085.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar ... gi\|168818305, gi... - gi\|205344661\|gb\|EDZ31425.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Welte... gi\|195632426, gi... - gi\|195632426\|gb\|EDX50910.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newpo... gi\|168260381, gi... - gi\|205350152\|gb\|EDZ36783.1\| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Hadar...	298.0	[0..1]	[193..1]
gi\|56129965, gi\|... - gi\|56415708\|ref\|YP_152783.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Parat... gi\|197364636, gi... - gi\|197364636\|ref\|YP_002144273.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar P...	298.0	[0..1]	[193..1]
gi\|153223913, gi... - gi\|153223913\|ref\|ZP_01954129.1\| DNA gyrase, subunit B [Vibrio cholerae MAK 757], gi\|124117960\|gb\|EAY... gi\|153819850, gi... - gi\|153819850\|ref\|ZP_01972517.1\| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457], gi\|126509611\|gb\|E... gi\|229508861, gi... - gi\|229508861\|ref\|ZP_04398352.1\| DNA gyrase subunit B [Vibrio cholerae B33], gi\|229354136\|gb\|EEO19068... GYRB_VIBCH - DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE=3 SV=1 gi\|75829895, gi\|... - gi\|75829895\|ref\|ZP_00759184.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|227008140, gi... - gi\|227080252\|ref\|YP_002808803.1\| DNA gyrase, subunit B [Vibrio cholerae M66-2], gi\|227008140\|gb\|ACP0... gi\|75828133, gi\|... - gi\|75828133\|ref\|ZP_00757568.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|229508300, gi... - gi\|229508300\|ref\|ZP_04397804.1\| DNA gyrase subunit B [Vibrio cholerae BX 330286], gi\|229354573\|gb\|EE... gi\|121727887, gi... - gi\|75814471\|ref\|ZP_00745055.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|229346195, gi... - gi\|229517132\|ref\|ZP_04406578.1\| DNA gyrase subunit B [Vibrio cholerae RC9], gi\|229346195\|gb\|EEO11167... gi\|229369229, gi... - gi\|229606574\|ref\|YP_002877222.1\| DNA gyrase subunit B [Vibrio cholerae MJ-1236], gi\|229369229\|gb\|ACQ... GYRB_VIBCH - DNA gyrase subunit B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=gyr...	298.0	[0..1]	[193..1]
gi\|91228345, gi\|... - gi\|91228345\|ref\|ZP_01262273.1\| DNA gyrase subunit B [Vibrio alginolyticus 12G01], gi\|91188105\|gb\|EAS...	297.0	[0..1]	[193..1]
gi\|62129956, gi\|... - gi\|62182323\|ref\|YP_218740.1\| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Chole...	297.0	[0..1]	[193..1]
gi\|45443725, gi\|... - gi\|45443725\|ref\|NP_995264.1\| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001], gi\|4... gi\|22127978, gi\|... - gi\|22127978\|ref\|NP_671401.1\| DNA gyrase subunit B [Yersinia pestis KIM], gi\|21961123\|gb\|AAM87652.1\|A...	297.0	[0..1]	[193..2]
gi\|165926159, gi... - gi\|165926159\|ref\|ZP_02221991.1\| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. F19910... gi\|165991425, gi... - gi\|166009503\|ref\|ZP_02230401.1\| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. E1979001]... Q663T5\|Q663T5_YERPS - DNA gyrase subunit B - Yersinia pseudotuberculosis gi\|51598224, gi\|... - gi\|51598224\|ref\|YP_072415.1\| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953], gi\|5159150... gi\|25292822 - pir\|\|AD0497 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) chain B [imported] - Yersinia pestis (... gi\|165915138, gi... - gi\|89105222\|ref\|ZP_01177745.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|218931071, gi... - gi\|218931071\|ref\|YP_002348946.1\| DNA gyrase subunit B [Yersinia pestis CO92], gi\|16124203\|ref\|NP_407... gi\|162420836, gi... - gi\|77632973\|ref\|ZP_00795135.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|108782043, gi... - gi\|108810130\|ref\|YP_654046.1\| DNA gyrase subunit B [Yersinia pestis Antiqua], gi\|108782043\|gb\|ABG161... gi\|77630961, gi\|... - gi\|77630961\|ref\|ZP_00793547.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|229904651, gi... - gi\|229904651\|ref\|ZP_04519762.1\| DNA gyrase subunit B [Yersinia pestis Nepal516], gi\|229678769\|gb\|EEO... gi\|166213310, gi... - gi\|166213310\|ref\|ZP_02239345.1\| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. B42003004... gi\|229700201, gi... - gi\|229896763\|ref\|ZP_04511926.1\| DNA gyrase subunit B [Yersinia pestis Pestoides A], gi\|229700201\|gb\|... gi\|167401541, gi... - gi\|167401541\|ref\|ZP_02307035.1\| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|229691225, gi... - gi\|229841886\|ref\|ZP_04462042.1\| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India 1... gi\|150260971, gi... - gi\|150260971\|ref\|ZP_01917699.1\| DNA gyrase subunit B [Yersinia pestis CA88-4125], gi\|149290379\|gb\|ED... gi\|166958263, gi... - gi\|167422871\|ref\|ZP_02314624.1\| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1... gi\|229839801, gi... - gi\|229839801\|ref\|ZP_04459960.1\| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|167055460, gi... - gi\|167425446\|ref\|ZP_02317199.1\| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973... gi\|169748800, gi... - gi\|170022266\|ref\|YP_001718771.1\| DNA gyrase subunit B [Yersinia pseudotuberculosis YPIII], gi\|169748... gi\|145209024, gi... - gi\|145597328\|ref\|YP_001161403.1\| DNA gyrase subunit B [Yersinia pestis Pestoides F], gi\|145209024\|gb... gi\|186893348, gi... - gi\|186893348\|ref\|YP_001870460.1\| DNA gyrase subunit B [Yersinia pseudotuberculosis PB1/+], gi\|186696...	297.0	[0..1]	[193..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTYNADAI EVLTGLEPVR RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HAKRVDVILH  60
   61 ADQSLEVIDD GRGMPVDIHP EEGVPAVELI LCISVVNALS KRVEVNVRRD GQVYNIAFEN 120
  121 GEKVQDLQVV GTCGKRNTGT SVHFWPDETF FDSPRFSVSR LTHVLKAKAV LCPGVEITFK 180
  181 DEINNTEQRW CYQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1s16A
Description:	Crystal Structure of E. coli Topoisomerase IV ParE 43kDa subunit complexed with ADPNP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits