YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205327842, gi...
Organism:	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205327842, gi....

Description	E-value	Query Range	Subject Range
gi\|74312019, gi\|... - gi\|74312019\|ref\|YP_310438.1\| hypothetical protein SSON_1502 [Shigella sonnei Ss046], gi\|73855496\|gb\|...	9.0E-36	[1..115]	[1..115]
YDHD_ECOLI - Probable monothiol glutaredoxin ydhD - Escherichia coli gi\|75234965, gi\|... - gi\|75234965\|ref\|ZP_00719244.1\| COG0278: Glutaredoxin-related protein [Escherichia coli E110019], gi\|... gi\|91210868, gi\|... - gi\|91210868\|ref\|YP_540854.1\| hypothetical protein UTI89_C1845 [Escherichia coli UTI89], gi\|91072442\|... gi\|191173466, gi... - gi\|75238787\|ref\|ZP_00722771.1\| COG0278: Glutaredoxin-related protein [Escherichia coli F11], gi\|1911... gi\|13361830, gi\|... - gi\|15831617\|ref\|NP_310390.1\| hypothetical protein ECs2363 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|193064910, gi... - gi\|75257073\|ref\|ZP_00728633.1\| COG0278: Glutaredoxin-related protein [Escherichia coli E22], gi\|1930... gi\|110641775, gi... - gi\|110641775\|ref\|YP_669505.1\| hypothetical protein ECP_1599 [Escherichia coli 536], gi\|110343367\|gb\|... gi\|188495397, gi... - gi\|75512912\|ref\|ZP_00735393.1\| COG0278: Glutaredoxin-related protein [Escherichia coli 53638], gi\|18... gi\|110805632, gi... - gi\|110805632\|ref\|YP_689152.1\| hypothetical protein SFV_1676 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|81241278, gi\|... - gi\|82777130\|ref\|YP_403479.1\| hypothetical protein SDY_1880 [Shigella dysenteriae Sd197], gi\|81241278... gi\|81245389, gi\|... - gi\|82543978\|ref\|YP_407925.1\| hypothetical protein SBO_1479 [Shigella boydii Sb227], gi\|81245389\|gb\|A... gi\|1742727, gi\|8... - gi\|89108496\|ref\|AP_002276.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|83587988, gi\|... - gi\|83587988\|ref\|ZP_00926614.1\| COG0278: Glutaredoxin-related protein [Escherichia coli 101-1], gi\|19... gi\|187429934, gi... - gi\|75178444\|ref\|ZP_00698490.1\| COG0278: Glutaredoxin-related protein [Shigella boydii BS512], gi\|187... gi\|157155524, gi... - gi\|75190693\|ref\|ZP_00703960.1\| COG0278: Glutaredoxin-related protein [Escherichia coli E24377A], gi\|... gi\|157161118, gi... - gi\|75195733\|ref\|ZP_00705803.1\| COG0278: Glutaredoxin-related protein [Escherichia coli HS], gi\|15716... gi\|194416117, gi... - gi\|75212990\|ref\|ZP_00712988.1\| COG0278: Glutaredoxin-related protein [Escherichia coli B171], gi\|194... gi\|190904013, gi... - gi\|75230898\|ref\|ZP_00717347.1\| COG0278: Glutaredoxin-related protein [Escherichia coli B7A], gi\|1911... gi\|117623837, gi... - gi\|117623837\|ref\|YP_852750.1\| hypothetical protein APECO1_735 [Escherichia coli APEC O1], gi\|1155129... gi\|124531615, gi... - gi\|124531615\|ref\|ZP_01701826.1\| glutaredoxin-like protein [Escherichia coli B], gi\|124498470\|gb\|EAY4... gi\|208731024, gi... - gi\|208816681\|ref\|ZP_03257801.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC404... gi\|208724927, gi... - gi\|208810411\|ref\|ZP_03252287.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC420... gi\|227885928, gi... - gi\|227885928\|ref\|ZP_04003733.1\| glutaredoxin [Escherichia coli 83972], gi\|227837107\|gb\|EEJ47573.1\| g... YDHD_ECOL6, GLRX... - Probable monothiol glutaredoxin ydhD - Escherichia coli O6, Glutaredoxin-4 OS=Escherichia coli O6 GN... gi\|209398586, gi... - gi\|209398586\|ref\|YP_002270723.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC41... gi\|237705600, gi... - gi\|237705600\|ref\|ZP_04536081.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|208818969, gi... - gi\|208818969\|ref\|ZP_03259289.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC404... gi\|238900870, gi... - gi\|238900870\|ref\|YP_002926666.1\| hypothetical protein BWG_1469 [Escherichia coli BW2952], gi\|2388603... gi\|215264902, gi... - gi\|215486830\|ref\|YP_002329261.1\| hypothetical protein E2348C_1740 [Escherichia coli O127:H6 str. E23... gi\|242377384, gi... - gi\|251785111\|ref\|YP_002999415.1\| hypothetical protein B21_01614 [Escherichia coli BL21], gi\|24237738... gi\|209918968, gi... - gi\|209918968\|ref\|YP_002293052.1\| hypothetical protein ECSE_1777 [Escherichia coli SE11], gi\|20991222... gi\|253324431, gi... - gi\|254288505\|ref\|YP_003054253.1\| hypothetical protein ECD_01624 [Escherichia coli BL21(DE3)], gi\|253... gi\|218360990, gi... - gi\|218554222\|ref\|YP_002387135.1\| hypothetical protein ECIAI1_1706 [Escherichia coli IAI1], gi\|218360... gi\|254161716, gi... - gi\|254161716\|ref\|YP_003044824.1\| hypothetical protein ECB_01624 [Escherichia coli B str. REL606], gi... gi\|217318247, gi... - gi\|217328900\|ref\|ZP_03444981.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. TW145... gi\|254592671, gi... - gi\|254793271\|ref\|YP_003078108.1\| monothiol glutaredoxin [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|168790559, gi... - gi\|189370004\|gb\|EDU88420.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC869], g... gi\|168783926, gi... - gi\|188998812\|gb\|EDU67798.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC4076], ... gi\|170019994, gi... - gi\|170019994\|ref\|YP_001724948.1\| hypothetical protein EcolC_1975 [Escherichia coli ATCC 8739], gi\|16... gi\|168802773, gi... - gi\|189375328\|gb\|EDU93744.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC508], g... gi\|170680379, gi... - gi\|170680379\|ref\|YP_001743599.1\| putative monothiol glutaredoxin [Escherichia coli SMS-3-5], gi\|1705... gi\|170081317, gi... - gi\|170081317\|ref\|YP_001730637.1\| monothiol glutaredoxin [Escherichia coli str. K-12 substr. DH10B], ... gi\|195940217 - gi\|195940217\|ref\|ZP_03085599.1\| hypothetical protein EscherichcoliO157_28126 [Escherichia coli O157:... gi\|194417036, gi... - gi\|194434698\|ref\|ZP_03066951.1\| putative monothiol glutaredoxin [Shigella dysenteriae 1012], gi\|1944... GLRX4_SHIFL - Glutaredoxin-4 OS=Shigella flexneri GN=grxD PE=3 SV=1 GLRX4_ECOL6 - Glutaredoxin-4 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=grxD PE=3 SV=1 gi\|24052014, gi\|... - gi\|24113044\|ref\|NP_707554.1\| hypothetical protein SF1682 [Shigella flexneri 2a str. 301], gi\|2405201... GLRX4_ECO57 - Glutaredoxin-4 OS=Escherichia coli O157:H7 GN=grxD PE=3 SV=1 gi\|30041422, gi\|... - gi\|30063170\|ref\|NP_837341.1\| hypothetical protein S1814 [Shigella flexneri 2a str. 2457T], gi\|300414... gi\|12515649, gi\|... - gi\|15802068\|ref\|NP_288090.1\| hypothetical protein Z2676 [Escherichia coli O157:H7 EDL933], gi\|125156... EG12181 - glutaredoxin-4 / Monothiol glutaredoxin Grx4 with CGFS motif; substrate for thioredoxin reductase; m... gi\|218427163, gi... - gi\|218689599\|ref\|YP_002397811.1\| hypothetical protein ECED1_1853 [Escherichia coli ED1a], gi\|2184271... gi\|218558525, gi... - gi\|218558525\|ref\|YP_002391438.1\| hypothetical protein ECS88_1703 [Escherichia coli S88], gi\|21836529... gi\|218699778, gi... - gi\|218699778\|ref\|YP_002407407.1\| hypothetical protein ECIAI39_1402 [Escherichia coli IAI39], gi\|2183... gi\|218351949, gi... - gi\|218695217\|ref\|YP_002402884.1\| hypothetical protein EC55989_1822 [Escherichia coli 55989], gi\|2183... gi\|218705154, gi... - gi\|218705154\|ref\|YP_002412673.1\| hypothetical protein ECUMN_1944 [Escherichia coli UMN026], gi\|21843... gi\|168752331, gi... - gi\|188013798\|gb\|EDU51920.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC4113], ... gi\|189364910, gi... - gi\|189364910\|gb\|EDU83326.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC4501], ... EG12181 - glutaredoxin-4 / Monothiol glutaredoxin Grx4 with CGFS motif; substrate for thioredoxin reductase; m... gi\|168758990, gi... - gi\|189354317\|gb\|EDU72736.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC4401], ... gi\|168775887, gi... - gi\|187768670\|gb\|EDU32514.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC4196], ... gi\|189360007, gi... - gi\|189360007\|gb\|EDU78426.1\| putative monothiol glutaredoxin [Escherichia coli O157:H7 str. EC4486], ...	1.0E-35	[1..115]	[1..115]
gi\|84779938, gi\|... - gi\|85059418\|ref\|YP_455120.1\| hypothetical protein SG1440 [Sodalis glossinidius str. 'morsitans'], gi...	2.0E-33	[1..110]	[1..110]
GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida (strain Pm70) GN=grxD PE=3 SV=1 GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida GN=grxD PE=3 SV=1	4.0E-33	[3..110]	[2..109]
gi\|238716508, gi... - gi\|77959190\|ref\|ZP_00823212.1\| COG0278: Glutaredoxin-related protein [Yersinia bercovieri ATCC 43970... gi\|77961719, gi\|... - gi\|77961719\|ref\|ZP_00825551.1\| COG0278: Glutaredoxin-related protein [Yersinia mollaretii ATCC 43969...	8.0E-33	[3..115]	[2..116]
gi\|86605274, gi\|... - gi\|86605274\|ref\|YP_474037.1\| glutaredoxin-like protein [Synechococcus sp. JA-3-3Ab], gi\|86553816\|gb\|... gi\|86605274 - gi\|86605274\|ref\|YP_474037.1\| glutaredoxin-like protein [Cyanobacteria bacterium Yellowstone A-Prime]	1.0E-32	[4..111]	[6..113]
gi\|77979563, gi\|... - gi\|77979563\|ref\|ZP_00834981.1\| COG0278: Glutaredoxin-related protein [Yersinia intermedia ATCC 29909...	1.0E-32	[3..112]	[2..111]
gi\|162354157, gi... - gi\|77633720\|ref\|ZP_00795839.1\| COG0278: Glutaredoxin-related protein [Yersinia pestis Angola], gi\|16... gi\|152959757, gi... - gi\|77629368\|ref\|ZP_00791954.1\| COG0278: Glutaredoxin-related protein [Yersinia pseudotuberculosis IP... gi\|167422119, gi... - gi\|167422119\|ref\|ZP_02313872.1\| monothiol glutaredoxin GrxD [Yersinia pestis biovar Orientalis str. ... gi\|167056072, gi... - gi\|167424885\|ref\|ZP_02316638.1\| monothiol glutaredoxin GrxD [Yersinia pestis biovar Mediaevalis str.... gi\|167469391 - gi\|167469391\|ref\|ZP_02334095.1\| monothiol glutaredoxin GrxD [Yersinia pestis FV-1] gi\|170024105, gi... - gi\|170024105\|ref\|YP_001720610.1\| hypothetical protein YPK_1866 [Yersinia pseudotuberculosis YPIII], ... gi\|186698702, gi... - gi\|186895676\|ref\|YP_001872788.1\| hypothetical protein YPTS_2370 [Yersinia pseudotuberculosis PB1/+],... gi\|51589903, gi\|... - gi\|51596621\|ref\|YP_070812.1\| hypothetical protein YPTB2297 [Yersinia pseudotuberculosis IP 32953], g... Q66A35\|Q66A35_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|25318358 - pir\|\|AH0290 conserved hypothetical protein YPO2383 [imported] - Yersinia pestis (strain CO92) gi\|229898471, gi... - gi\|229898471\|ref\|ZP_04513617.1\| monothiol glutaredoxin [Yersinia pestis biovar Orientalis str. India... gi\|16122606, gi\|... - gi\|218929474\|ref\|YP_002347349.1\| hypothetical protein YPO2383 [Yersinia pestis CO92], gi\|16122606\|re... gi\|229701957, gi... - gi\|229895069\|ref\|ZP_04510246.1\| monothiol glutaredoxin [Yersinia pestis Pestoides A], gi\|229701957\|g... gi\|165913513, gi... - gi\|89103796\|ref\|ZP_01176360.1\| COG0278: Glutaredoxin-related protein [Yersinia pestis biovar Orienta... gi\|165926467, gi... - gi\|165926467\|ref\|ZP_02222299.1\| monothiol glutaredoxin GrxD [Yersinia pestis biovar Orientalis str. ... gi\|229837908, gi... - gi\|229837908\|ref\|ZP_04458067.1\| monothiol glutaredoxin [Yersinia pestis biovar Orientalis str. PEXU2... gi\|108779637, gi... - gi\|108807724\|ref\|YP_651640.1\| hypothetical protein YPA_1729 [Yersinia pestis Antiqua], gi\|108779637\|... gi\|166010638, gi... - gi\|166010638\|ref\|ZP_02231536.1\| monothiol glutaredoxin GrxD [Yersinia pestis biovar Antiqua str. E19... gi\|229902311, gi... - gi\|229902311\|ref\|ZP_04517431.1\| monothiol glutaredoxin [Yersinia pestis Nepal516], gi\|229680646\|gb\|E... gi\|166210851, gi... - gi\|166210851\|ref\|ZP_02236886.1\| monothiol glutaredoxin GrxD [Yersinia pestis biovar Antiqua str. B42... gi\|167400819, gi... - gi\|167400819\|ref\|ZP_02306325.1\| monothiol glutaredoxin GrxD [Yersinia pestis biovar Antiqua str. UG0... gi\|145209762, gi... - gi\|145598066\|ref\|YP_001162142.1\| hypothetical protein YPDSF_0763 [Yersinia pestis Pestoides F], gi\|1... gi\|149292119, gi... - gi\|149365706\|ref\|ZP_01887741.1\| hypothetical protein YPE_0880 [Yersinia pestis CA88-4125], gi\|149292...	1.0E-32	[3..115]	[2..116]
gi\|86282021, gi\|... - gi\|86357919\|ref\|YP_469811.1\| glutaredoxin protein [Rhizobium etli CFN 42], gi\|86282021\|gb\|ABC91084.1...	2.0E-32	[1..111]	[1..111]
gi\|114546780, gi... - gi\|114772689\|ref\|ZP_01450031.1\| hypothetical protein OM2255_21088 [alpha proteobacterium HTCC2255], ... gi\|114772689 - gi\|114772689\|ref\|ZP_01450031.1\| hypothetical protein OM2255_21088 [alpha proteobacterium HTCC2255] gi\|221134761 - gi\|221134761\|ref\|ZP_03561064.1\| putative glutaredoxin-like protein [Glaciecola sp. HTCC2999]	2.0E-32	[3..115]	[2..114]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTIEKIQR QIAENPILLY MKGSPKLPSC GFSAQAVQAL SACGERFAYV DILQNPDIRA  60
   61 ELPKYANWPT FPQLWVDGEL VGGCDIVIEM YQRGELQQLI KETAAKYKTQ EPDAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1ykaA
Description:	Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits