YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205336454, gi...
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL486
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205336454, gi....

Description	E-value	Query Range	Subject Range
gi\|191171364, gi... - gi\|191171364\|ref\|ZP_03032913.1\| polyketide cyclase/dehydrase family protein [Escherichia coli F11], ... gi\|117624839, gi... - gi\|117624839\|ref\|YP_853752.1\| hypothetical protein APECO1_3916 [Escherichia coli APEC O1], gi\|115513... gi\|237706793, gi... - gi\|237706793\|ref\|ZP_04537274.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|110344371, gi... - gi\|110642779\|ref\|YP_670509.1\| hypothetical protein ECP_2619 [Escherichia coli 536], gi\|110344371\|gb\|... gi\|227834825, gi... - gi\|227888185\|ref\|ZP_04005990.1\| possibe oligoketide cyclase/lipid transport protein [Escherichia col... gi\|91211954, gi\|... - gi\|91211954\|ref\|YP_541940.1\| hypothetical protein UTI89_C2953 [Escherichia coli UTI89], gi\|91073528\|... PAST_ECOL6 - Persistence and stress-resistance toxin PasT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|215487968, gi... - gi\|215487968\|ref\|YP_002330399.1\| hypothetical protein E2348C_2907 [Escherichia coli O127:H6 str. E23... gi\|218366307, gi... - gi\|218559538\|ref\|YP_002392451.1\| hypothetical protein ECS88_2805 [Escherichia coli S88], gi\|21836630...	1.0E-40	[1..157]	[1..157]
gi\|15803139, gi\|... - gi\|15803139\|ref\|NP_289171.1\| hypothetical protein Z3912 [Escherichia coli O157:H7 EDL933], gi\|125170... gi\|15832735, gi\|... - gi\|15832735\|ref\|NP_311508.1\| hypothetical protein ECs3481 [Escherichia coli O157:H7], gi\|13362952\|db... gi\|218555198, gi... - gi\|218555198\|ref\|YP_002388111.1\| hypothetical protein ECIAI1_2740 [Escherichia coli IAI1], gi\|218361... gi\|218352974, gi... - gi\|218696242\|ref\|YP_002403909.1\| hypothetical protein EC55989_2907 [Escherichia coli 55989], gi\|2183... gi\|208814184, gi... - gi\|208814184\|ref\|ZP_03255513.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|208821713, gi... - gi\|208821713\|ref\|ZP_03262033.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|209396556, gi... - gi\|209396556\|ref\|YP_002272088.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:... gi\|217327876, gi... - gi\|217327876\|ref\|ZP_03443959.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|51773740 - gi\|51773740\|emb\|CAH23265.1\| hypothetical protein [Escherichia coli] gi\|209762460, gi... - pir\|\|E85908 hypothetical protein Z3912 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|194414071, gi... - gi\|194427838\|ref\|ZP_03060384.1\| polyketide cyclase/dehydrase family protein [Escherichia coli B171],... gi\|73856654, gi\|... - gi\|74313177\|ref\|YP_311596.1\| hypothetical protein SSON_2744 [Shigella sonnei Ss046], gi\|73856654\|gb\|... gi\|194433023, gi... - gi\|194433023\|ref\|ZP_03065306.1\| polyketide cyclase/dehydrase family protein [Shigella dysenteriae 10... gi\|195939670 - gi\|195939670\|ref\|ZP_03085052.1\| hypothetical protein EscherichcoliO157_25245 [Escherichia coli O157:... gi\|208808479, gi... - gi\|208808479\|ref\|ZP_03250816.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H... gi\|189377151, gi... - gi\|189377151\|gb\|EDU95567.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|191167063, gi... - gi\|191167063\|ref\|ZP_03028884.1\| polyketide cyclase/dehydrase family protein [Escherichia coli B7A], ... gi\|81242125, gi\|... - gi\|82777977\|ref\|YP_404326.1\| hypothetical protein SDY_2792 [Shigella dysenteriae Sd197], gi\|81242125... gi\|192926406, gi... - gi\|193065992\|ref\|ZP_03047051.1\| polyketide cyclase/dehydrase family protein [Escherichia coli E22], ... gi\|82545162, gi\|... - gi\|82545162\|ref\|YP_409109.1\| hypothetical protein SBO_2754 [Shigella boydii Sb227], gi\|81246573\|gb\|A... gi\|15832735, gi\|... - gi\|15832735\|ref\|NP_311508.1\| hypothetical protein ECs3481 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|192955414, gi... - gi\|193071261\|ref\|ZP_03052181.1\| polyketide cyclase/dehydrase family protein [Escherichia coli E11001... gi\|168768706, gi... - gi\|189362021\|gb\|EDU80440.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|187769571, gi... - gi\|187769571\|gb\|EDU33415.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189003569, gi... - gi\|189003569\|gb\|EDU72555.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189370851, gi... - gi\|189370851\|gb\|EDU89267.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|254794564, gi... - gi\|254794564\|ref\|YP_003079401.1\| hypothetical protein ECSP_3563 [Escherichia coli O157:H7 str. TW143... gi\|168752579, gi... - gi\|188013616\|gb\|EDU51738.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|189357236, gi... - gi\|189357236\|gb\|EDU75655.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st... gi\|168762411, gi... - gi\|189367230\|gb\|EDU85646.1\| polyketide cyclase/dehydrase family protein [Escherichia coli O157:H7 st...	3.0E-40	[1..157]	[1..157]
gi\|124528017, gi... - gi\|124528017\|ref\|ZP_01699370.1\| cyclase/dehydrase [Escherichia coli B], gi\|124500909\|gb\|EAY48377.1\| ... EG13193 - toxic UPF0083 family protein inhibitor of 70S ribosome formation / Toxic protein, inhibits 70S ribos... YFJG_ECOLI - UPF0083 protein yfjG - Escherichia coli RATA_SHIFL - Ribosome association toxin RatA OS=Shigella flexneri GN=ratA PE=3 SV=1 gi\|194421629, gi... - gi\|194439453\|ref\|ZP_03071529.1\| polyketide cyclase/dehydrase family protein [Escherichia coli 101-1]... gi\|238860364, gi... - gi\|238901778\|ref\|YP_002927574.1\| hypothetical protein BWG_2377 [Escherichia coli BW2952], gi\|2388603... gi\|218547863, gi... - gi\|218547863\|ref\|YP_002381654.1\| hypothetical protein EFER_0454 [Escherichia fergusonii ATCC 35469],... gi\|242378213, gi... - gi\|251785940\|ref\|YP_003000244.1\| hypothetical protein B21_02471 [Escherichia coli BL21], gi\|24237821... gi\|24113956, gi\|... - ref\|NP_708466.1\| hypothetical protein SF2678 [Shigella flexneri 2a str. 301], gb\|AAN44173.1\| orf, c... gi\|218701130, gi... - gi\|218701130\|ref\|YP_002408759.1\| hypothetical protein ECIAI39_2822 [Escherichia coli IAI39], gi\|2183... EG13193 - toxic UPF0083 family protein inhibitor of 70S ribosome formation / Toxic protein, inhibits 70S ribos... gi\|218433216, gi... - gi\|218706119\|ref\|YP_002413638.1\| hypothetical protein ECUMN_2943 [Escherichia coli UMN026], gi\|21843... gi\|253974489, gi... - gi\|254162588\|ref\|YP_003045696.1\| hypothetical protein ECB_02507 [Escherichia coli B str. REL606], gi... gi\|169754033, gi... - gi\|170019105\|ref\|YP_001724059.1\| hypothetical protein EcolC_1065 [Escherichia coli ATCC 8739], gi\|16... gi\|253772488, gi... - gi\|254289349\|ref\|YP_003055097.1\| hypothetical protein ECD_02507 [Escherichia coli BL21(DE3)], gi\|253... gi\|89109419, gi\|... - gi\|89109419\|ref\|AP_003199.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|180... gi\|169890056, gi... - gi\|170082221\|ref\|YP_001731541.1\| hypothetical protein ECDH10B_2785 [Escherichia coli str. K-12 subst... gi\|226839318, gi... - gi\|254037694\|ref\|ZP_04871752.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683931...	4.0E-40	[1..157]	[1..157]
gi\|26991415, gi\|... - gi\|26991415\|ref\|NP_746840.1\| cyclase/dehydrase [Pseudomonas putida KT2440], gi\|24986486\|gb\|AAN70304.... gi\|82715289, gi\|... - gi\|82737636\|ref\|ZP_00900483.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82715289\|g...	3.0E-37	[11..154]	[37..180]
gi\|197363579, gi... - gi\|197363579\|ref\|YP_002143216.1\| hypothetical protein SSPA2371 [Salmonella enterica subsp. enterica ... gi\|56128909, gi\|... - gi\|56414652\|ref\|YP_151727.1\| hypothetical protein SPA2546 [Salmonella enterica subsp. enterica serov...	4.0E-37	[14..158]	[1..145]
gi\|95108993, gi\|... - gi\|95108993\|emb\|CAK13689.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047800... gi\|95108993 - gi\|95108993\|emb\|CAK13689.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	7.0E-37	[16..156]	[4..144]
gi\|21959995, gi\|... - gi\|22126954\|ref\|NP_670377.1\| hypothetical protein y3078 [Yersinia pestis KIM], gi\|21959995\|gb\|AAM866... gi\|45435746, gi\|... - gi\|45440888\|ref\|NP_992427.1\| hypothetical protein YP_1054 [Yersinia pestis biovar Microtus str. 9100...	1.0E-36	[11..157]	[32..178]
gi\|77974742 - gi\|77974742\|ref\|ZP_00830281.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia freder...	1.0E-36	[14..157]	[1..144]
gi\|75241604 - gi\|75241604\|ref\|ZP_00725441.1\| COG2867: Oligoketide cyclase/lipid transport protein [Escherichia col...	1.0E-36	[10..157]	[1..148]
gi\|153947960, gi... - gi\|77632095\|ref\|ZP_00794681.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pseudo...	1.0E-36	[14..157]	[1..144]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLFTRFMLM GIAMPQISRT ALVPYSAEQM YQLVNDVQSY PQFLPGCVGS RVLESSPAQM  60
   61 TAAVDVSKAG ISKTFTTRNQ LTRNQSILMH LVDGPFKKLI GGWKFTPLSP EACRIEFQLD 120
  121 FEFTNKLIEL AFGRIFKELA SNMVQAFTVR AKEVYRAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0116392906163881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: