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View Structure Prediction Details

Protein: PMTE_ARATH
Organism: Arabidopsis thaliana
Length: 621 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMTE_ARATH.

Description E-value Query
Range
Subject
Range
gi|7268555, gi|7... - pir||T05089 hypothetical protein T6K21.210 - Arabidopsis thaliana, gi|7268555|emb|CAB78805.1| putati...
523.0 [0..1] [607..1]

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Predicted Domain #1
Region A:
Residues: [1-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKHNPPGN NRSRSTLSLL VVVGLCCFFY LLGAWQKSGF GKGDSIAMEI TKQAQCTDIV  60
   61 TDLDFEPHHN TVKIPHKADP KPVSFKPCDV KLKDYTPCQE QDRAMKFPRE NMIYRERHCP 120
  121 PDNEKLRCLV PAPKGYMTPF PWPKSRDYVH YANAPFKSLT VEKAGQNWVQ FQGNVFKFPG 180
  181 GGTMFPQGAD AYIEELASVI PIKDGSVRTA LDTGCGVASW GAYMLKRNVL TMSFAPRDNH 240
  241 EAQVQFALER GVPAIIAVLG SILLPYPARA FDMAQCSRCL IPWTANEGTY LMEVDRVLRP 300
  301 GGYWVLSGPP INWKTWHKTW NRTKAELNAE QKRIEGIAES LCWEKKYEKG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.12965224171975 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [351-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIAIFRKKIN DRSCDRSTPV DTCKRKDTDD VWYKEIETCV TPFPKVSNEE EVAGGKLKKF  60
   61 PERLFAVPPS ISKGLINGVD EESYQEDINL WKKRVTGYKR INRLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 1oriA
Description: Protein arginine N-methyltransferase 1, PRMT1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [456-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSTRYRNVMD MNAGLGGFAA ALESPKSWVM NVIPTINKNT LSVVYERGLI GIYHDWCEGF  60
   61 STYPRTYDFI HASGVFSLYQ HSCKLEDILL ETDRILRPEG IVIFRDEVDV LNDVRKIVDG 120
  121 MRWDTKLMDH EDGPLVPEKI LVATKQYWVA GDDGNNSPSS SNSEEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 1xxlA
Description: The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle