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View Structure Prediction Details

Protein: GWD1_ARATH
Organism: Arabidopsis thaliana
Length: 1399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GWD1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSVVHNLL NRGLIRPLNF EHQNKLNSSV YQTSTANPAL GKIGRSKLYG KGLKQAGRSL  60
   61 VTETGGRPLS FVPRAVLAMD PQAAEKFSLD GNIDLLVEVT STTVREVNIQ IAYTSDTLFL 120
  121 HWGAILDNKE NWVLPSRSPD RTQNFKNSAL RTPFVKSGGN SHLKLEIDDP AIHAIEFLIF 180
  181 DESRNKWYKN NGQNFHINL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [200-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTERNVKQNV SVPEDLVQIQ AYLRWERKGK QMYNPEKEKE EYEAARTELR EEMMRGASVE  60
   61 DLRAKLLKKD NSNESPKSNG TSSSGREEKK KVSKQPERKK NYNTDKIQRK GRDLTKLIYK 120
  121 H

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [321-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VADFVEPESK SSSEPRSLTT LEIYAKAKEE QETTPVFSKK TFKLEGSAIL VFVTKLSGKT  60
   61 KIHVATDFKE PVTLHWALSQ KGGEWLDPPS DILPPNSLPV RGAVDTKLTI TSTDLPSPVQ 120
  121 TFELEIEGDS YKGMPFVLNA GERWIKNNDS DFYVDFAKEE KHVQKDYGDG KGTAKHLLDK 180
  181 IADLESEAQK SFMHRFNIAA DLVDEAKSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [530-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQLGFAGILV WMRFMATRQL VWNKNYNVKP REISKAQDRL TDLLQDVYAS YPEYRELLRM  60
   61 IMSTVG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [596-689]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGGEGDVGQR IRDEILVIQR KNDCKGGIME EWHQKLHNNT SPDDVVICQA LMDYIKSDFD  60
   61 LSVYWKTLND NGITKERLLS YDRAIHSEPN FRGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [690-808]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKDGLLRDLG HYMRTLKAVH SGADLESAIQ NCMGYQDDGE GFMVGVQINP VSGLPSGYPD  60
   61 LLRFVLEHVE EKNVEPLLEG LLEARQELRP LLLKSHDRLK DLLFLDLALD STVRTAIER

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [809-1076]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYEQLNDAGP EKIMYFISLV LENLALSSDD NEDLIYCLKG WQFALDMCKS KKDHWALYAK  60
   61 SVLDRSRLAL ASKAERYLEI LQPSAEYLGS CLGVDQSAVS IFTEEIIRAG SAAALSSLVN 120
  121 RLDPVLRKTA NLGSWQVISP VEVVGYVIVV DELLTVQNKT YDRPTIIVAN RVRGEEEIPD 180
  181 GAVAVLTPDM PDVLSHVSVR ARNGKICFAT CFDSGILSDL QGKDGKLLSL QPTSADVVYK 240
  241 EVNDSELSSP SSDNLEDAPP SISLVKKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1077-1399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAGRYAISSE EFTSDLVGAK SRNIGYLKGK VPSWVGIPTS VALPFGVFEK VISEKANQAV  60
   61 NDKLLVLKKT LDEGDQGALK EIRQTLLGLV APPELVEELK STMKSSDMPW PGDEGEQRWE 120
  121 QAWAAIKKVW ASKWNERAYF STRKVKLDHD YLCMAVLVQE VINADYAFVI HTTNPSSGDS 180
  181 SEIYAEVVKG LGETLVGAYP GRSLSFICKK NNLDSPLVLG YPSKPIGLFI RRSIIFRSDS 240
  241 NGEDLEGYAG AGLYDSVPMD EEDQVVLDYT TDPLITDLSF QKKVLSDIAR AGDAIEKLYG 300
  301 TAQDIEGVIR DGKLYVVQTR PQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.30103
Match: 2olsA
Description: No description for 2olsA was found.

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