YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170025895, gi...
Organism:	Yersinia pseudotuberculosis YPIII
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170025895, gi....

Description	E-value	Query Range	Subject Range
gi\|21957466, gi\|... - gi\|22124657\|ref\|NP_668080.1\| DNA polymerase III subunit chi [Yersinia pestis KIM], gi\|21957466\|gb\|AA...	1.0E-49	[1..149]	[10..158]
gi\|36787741, gi\|... - gi\|37528303\|ref\|NP_931648.1\| DNA polymerase III subunit chi [Photorhabdus luminescens subsp. laumond...	2.0E-49	[1..148]	[1..148]
gi\|238787642, gi... - gi\|77974072\|ref\|ZP_00829615.1\| COG2927: DNA polymerase III, chi subunit [Yersinia frederiksenii ATCC...	4.0E-49	[1..149]	[1..149]
gi\|167551268, gi... - gi\|205323926\|gb\|EDZ11765.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica ser... gi\|62182902, gi\|... - gi\|62182902\|ref\|YP_219319.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=holC] [protein=DNA polymerase III subunit chi] [protein_id=YP_005240801.1] [location=complemen... gi\|238910632 - gi\|238910632\|ref\|ZP_04654469.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|214000046 - gi\|214000046\|ref\|ZP_03410781.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|213857513 - gi\|213857513\|ref\|ZP_03384484.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|213650370 - gi\|213650370\|ref\|ZP_03380423.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|213586776 - gi\|213586776\|ref\|ZP_03368602.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|213427637 - gi\|213427637\|ref\|ZP_03360387.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|213419117 - gi\|213419117\|ref\|ZP_03352183.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|213161211 - gi\|213161211\|ref\|ZP_03346921.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ... gi\|207859602, gi... - gi\|207859602\|ref\|YP_002246253.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica... gi\|197247365, gi... - gi\|197247365\|ref\|YP_002149396.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enteric... gi\|194449358, gi... - gi\|194449358\|ref\|YP_002048500.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica... gi\|194404091, gi... - gi\|194445428\|ref\|YP_002043716.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enteric... gi\|205342292, gi... - gi\|205342292\|gb\|EDZ29056.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica ser... gi\|168464642, gi... - gi\|195632900\|gb\|EDX51354.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica ser... gi\|39546402 - gi\|39546402\|ref\|NP_463336.2\| DNA polymerase III subunit chi [Salmonella typhimurium LT2] gi\|205337015, gi... - gi\|205337015\|gb\|EDZ23779.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica ser... gi\|205330399, gi... - gi\|205330399\|gb\|EDZ17163.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica ser...	4.0E-49	[1..145]	[1..145]
gi\|16505585, gi\|... - gi\|25355624\|pir\|\|AD1061 DNA polymerase III, chi chain [imported] - Salmonella enterica subsp. enteri... gi\|16763277 - gi\|16763277\|ref\|NP_458894.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... gi\|29144756, gi\|... - gi\|29144756\|ref\|NP_808098.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... gi\|197939984, gi... - gi\|198245468\|ref\|YP_002218340.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enteric... gi\|56416248, gi\|... - gi\|56416248\|ref\|YP_153323.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica ser... gi\|197240684, gi... - gi\|197262429\|ref\|ZP_03162503.1\| DNA polymerase III, chi subunit [Salmonella enterica subsp. enterica... gi\|197096648, gi... - gi\|197365171\|ref\|YP_002144808.1\| DNA polymerase III subunit chi [Salmonella enterica subsp. enterica...	6.0E-49	[1..145]	[14..158]
gi\|238793059, gi... - gi\|77978581\|ref\|ZP_00834008.1\| COG2927: DNA polymerase III, chi subunit [Yersinia intermedia ATCC 29...	6.0E-49	[1..149]	[1..149]
gi\|77957033, gi\|... - gi\|77957033\|ref\|ZP_00821101.1\| COG2927: DNA polymerase III, chi subunit [Yersinia bercovieri ATCC 43...	8.0E-49	[1..149]	[1..149]
gi\|110346210, gi... - gi\|110644618\|ref\|YP_672348.1\| DNA polymerase III subunit chi [Escherichia coli 536], gi\|110346210\|gb... gi\|124528318, gi... - gi\|124528318\|ref\|ZP_01699642.1\| DNA polymerase III chi subunit, HolC [Escherichia coli B], gi\|124500... gi\|110808001, gi... - gi\|110808001\|ref\|YP_691521.1\| DNA polymerase III subunit chi [Shigella flexneri 5 str. 8401], gi\|110... gi\|91075388, gi\|... - gi\|91213814\|ref\|YP_543800.1\| DNA polymerase III subunit chi [Escherichia coli UTI89], gi\|91075388\|gb... gi\|15834490, gi\|... - gi\|15834490\|ref\|NP_313263.1\| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. Sakai], g... gi\|218368186, gi... - gi\|218561417\|ref\|YP_002394330.1\| DNA polymerase III subunit chi [Escherichia coli S88], gi\|218368186... gi\|218556806, gi... - gi\|218556806\|ref\|YP_002389720.1\| DNA polymerase III subunit chi [Escherichia coli IAI1], gi\|21836357... gi\|218698007, gi... - gi\|218698007\|ref\|YP_002405674.1\| DNA polymerase III subunit chi [Escherichia coli 55989], gi\|2183547... gi\|218430210, gi... - gi\|218692646\|ref\|YP_002400858.1\| DNA polymerase III subunit chi [Escherichia coli ED1a], gi\|21843021... gi\|218707865, gi... - gi\|218707865\|ref\|YP_002415384.1\| DNA polymerase III subunit chi [Escherichia coli UMN026], gi\|218434... gi\|218372948, gi... - gi\|218702962\|ref\|YP_002410591.1\| DNA polymerase III subunit chi [Escherichia coli IAI39], gi\|2183729... gi\|26111599, gi\|... - gi\|26251167\|ref\|NP_757207.1\| DNA polymerase III subunit chi [Escherichia coli CFT073], gi\|26111599\|g... gi\|209749472, gi... - pir\|\|F86124 DNA polymerase III, chi subunit [imported] - Escherichia coli (strain O157:H7, substrain... gi\|12519268, gi\|... - gi\|15804851\|ref\|NP_290892.1\| DNA polymerase III subunit chi [Escherichia coli O157:H7 EDL933], gi\|12... gi\|15834490, gi\|... - gi\|15834490\|ref\|NP_313263.1\| DNA polymerase III subunit chi [Escherichia coli O157:H7], gi\|13364714\|... gi\|115515727, gi... - gi\|117626603\|ref\|YP_859926.1\| DNA polymerase III subunit chi [Escherichia coli APEC O1], gi\|11551572... gi\|168751048, gi... - gi\|188014810\|gb\|EDU52932.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4113], ... gi\|189368872, gi... - gi\|189368872\|gb\|EDU87288.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4501], ... gi\|189357771, gi... - gi\|189357771\|gb\|EDU76190.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4401], ... gi\|227886687, gi... - gi\|227886687\|ref\|ZP_04004492.1\| DNA polymerase III, chi subunit [Escherichia coli 83972], gi\|2278362... gi\|237703934, gi... - gi\|237703934\|ref\|ZP_04534415.1\| DNA polymerase III [Escherichia sp. 3_2_53FAA], gi\|226901846\|gb\|EEH8... gi\|254796279, gi... - gi\|254796279\|ref\|YP_003081116.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW14... gi\|208813184, gi... - gi\|208813184\|ref\|ZP_03254513.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC404... gi\|208805655, gi... - gi\|208805655\|ref\|ZP_03247992.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC420... gi\|81243473, gi\|... - gi\|82779325\|ref\|YP_405674.1\| DNA polymerase III subunit chi [Shigella dysenteriae Sd197], gi\|8124347... gi\|209400926, gi... - gi\|209400926\|ref\|YP_002273803.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC41... gi\|81247899, gi\|... - gi\|82546488\|ref\|YP_410435.1\| DNA polymerase III subunit chi [Shigella boydii Sb227], gi\|81247899\|gb\|... gi\|208741805, gi... - gi\|208821682\|ref\|ZP_03262002.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC404... gi\|215489601, gi... - gi\|215489601\|ref\|YP_002332032.1\| DNA polymerase III subunit chi [Escherichia coli O127:H6 str. E2348... gi\|209915015, gi... - gi\|209921756\|ref\|YP_002295840.1\| DNA polymerase III subunit chi [Escherichia coli SE11], gi\|20991501... gi\|218551555, gi... - gi\|218551555\|ref\|YP_002385347.1\| DNA polymerase III subunit chi [Escherichia fergusonii ATCC 35469],... gi\|217321931, gi... - gi\|217325710\|ref\|ZP_03441794.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. TW145... gi\|190902730, gi... - gi\|75229626\|ref\|ZP_00716165.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli B7A], gi\|1... gi\|187770208, gi... - gi\|187770208\|gb\|EDU34052.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4196], ... gi\|192956907, gi... - gi\|75235436\|ref\|ZP_00719644.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli E110019], ... gi\|189364253, gi... - gi\|189364253\|gb\|EDU82672.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4486], ... gi\|157163734, gi... - gi\|75198107\|ref\|ZP_00708177.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli HS], gi\|15... gi\|168784907, gi... - gi\|189375030\|gb\|EDU93446.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC869], g... gi\|194426628, gi... - gi\|75212190\|ref\|ZP_00712230.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli B171], gi\|... gi\|168782784, gi... - gi\|188999780\|gb\|EDU68766.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC4076], ... gi\|188491646, gi... - gi\|75515493\|ref\|ZP_00737650.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli 53638], gi... gi\|170021733, gi... - gi\|170021733\|ref\|YP_001726687.1\| DNA polymerase III subunit chi [Escherichia coli ATCC 8739], gi\|169... gi\|74314738, gi\|... - gi\|74314738\|ref\|YP_313157.1\| DNA polymerase III subunit chi [Shigella sonnei Ss046], gi\|73858215\|gb\|... gi\|189379542, gi... - gi\|189379542\|gb\|EDU97958.1\| DNA polymerase III, chi subunit [Escherichia coli O157:H7 str. EC508], g... gi\|75242354, gi\|... - gi\|75242354\|ref\|ZP_00726116.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli F11], gi\|1... gi\|195937284 - gi\|195937284\|ref\|ZP_03082666.1\| DNA polymerase III subunit chi [Escherichia coli O157:H7 str. EC4024... gi\|75258357 - gi\|75258357\|ref\|ZP_00729788.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli E22] gi\|170766907, gi... - gi\|170766907\|ref\|ZP_02901360.1\| DNA polymerase III, chi subunit [Escherichia albertii TW07627], gi\|1... gi\|187431092, gi... - gi\|75179360\|ref\|ZP_00699364.1\| COG2927: DNA polymerase III, chi subunit [Shigella boydii BS512], gi\|... gi\|157159204, gi... - gi\|75188969\|ref\|ZP_00702236.1\| COG2927: DNA polymerase III, chi subunit [Escherichia coli E24377A], ... gi\|194417879, gi... - gi\|83569372\|ref\|ZP_00920826.1\| COG2927: DNA polymerase III, chi subunit [Shigella dysenteriae 1012],...	2.0E-48	[1..145]	[1..145]
gi\|169891533, gi... - gi\|170083698\|ref\|YP_001733018.1\| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr.... gi\|238860832, gi... - gi\|238903360\|ref\|YP_002929156.1\| DNA polymerase III, chi subunit [Escherichia coli BW2952], gi\|23886... HOLC_ECOLI - DNA polymerase III subunit chi (EC 2.7.7.7) - Escherichia coli gi\|89110975, gi\|... - gi\|89110975\|ref\|AP_004755.1\| DNA polymerase III, chi subunit [Escherichia coli str. K-12 substr. W31... EG11413 - DNA polymerase III, chi subunit / DNA polymerase III, chi subunit EG11413 - DNA polymerase III, chi subunit / DNA polymerase III, chi subunit	2.0E-48	[1..145]	[1..145]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNATFYLLE HDTPAGELRA HEALACEIAA ERWRAGKRVL IACESQEQAQ RLDEALWQRA  60
   61 PEQFVPHNLA GEGPKYGAPV ELAWPERRGN SPRDLLISLL PEFAGFATAF HEVVDFVPYE 120
  121 ENLKQLARDR YKSYRSVGFH LTTATPPTN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1em8A
Description:	Crystal structure of chi and psi subunit heterodimer from DNA POL III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed DNA polymerase activity	10.5323303172282	bayes_pls_golite062009
DNA polymerase activity	10.4830348241445	bayes_pls_golite062009
nucleotidyltransferase activity	7.90238563893338	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	3.96930833729486	bayes_pls_golite062009
transferase activity	3.35643625144672	bayes_pls_golite062009
exonuclease activity	1.41483511359931	bayes_pls_golite062009
catalytic activity	1.13824203225664	bayes_pls_golite062009
5'-3' exonuclease activity	0.602142505358069	bayes_pls_golite062009
nuclease activity	0.0887585005803604	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: