YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167053963, gi...
Organism:	Yersinia pestis biovar Mediaevalis str. K1973002
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167053963, gi....

Description	E-value	Query Range	Subject Range
gi\|238726146, gi... - gi\|77976785\|ref\|ZP_00832256.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia inte...	163.0	[0..1]	[89..1]
gi\|238797618, gi... - gi\|77960495\|ref\|ZP_00824364.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia moll...	159.0	[0..1]	[89..1]
gi\|238713476, gi... - gi\|77956896\|ref\|ZP_00820970.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia berc...	159.0	[0..1]	[89..1]
gi\|77972094, gi\|... - gi\|77972094\|ref\|ZP_00827673.1\| COG3084: Uncharacterized protein conserved in bacteria [Yersinia fred...	158.0	[0..1]	[89..1]
gi\|53728522, gi\|... - gi\|53728522\|ref\|ZP_00132478.2\| COG3084: Uncharacterized protein conserved in bacteria [Haemophilus s...	158.0	[0..1]	[87..1]
gi\|23466588, gi\|... - gi\|23466588\|ref\|ZP_00122176.1\| COG3084: Uncharacterized protein conserved in bacteria [Haemophilus s...	158.0	[0..1]	[87..1]
gi\|91074976, gi\|... - gi\|91213402\|ref\|YP_543388.1\| hypothetical protein UTI89_C4445 [Escherichia coli UTI89], gi\|91074976\|... gi\|226902823, gi... - gi\|237702886\|ref\|ZP_04533367.1\| yihD [Escherichia sp. 3_2_53FAA], gi\|226902823\|gb\|EEH89082.1\| yihD [... gi\|254039067, gi... - gi\|254039067\|ref\|ZP_04873117.1\| yihD [Escherichia sp. 1_1_43], gi\|226838503\|gb\|EEH70532.1\| yihD [Esc... gi\|26111050, gi\|... - gi\|26250619\|ref\|NP_756659.1\| hypothetical protein c4802 [Escherichia coli CFT073], gi\|26111050\|gb\|AA... tr\|A0A0G3HRP7\|A0... - DUF1040 protein YihD protein OS=Escherichia coli (strain K12) GN=yihD PE=4 SV=1	156.0	[0..1]	[89..11]
gi\|49609509, gi\|... - gi\|50118983\|ref\|YP_048150.1\| hypothetical protein ECA0018 [Pectobacterium atrosepticum SCRI1043], gi...	156.0	[0..1]	[89..1]
gi\|5712702 - gi\|5712702\|gb\|AAD47615.1\|AF146615_3 YihD [Pectobacterium carotovorum subsp. carotovorum] gi\|253690590, gi... - gi\|253690590\|ref\|YP_003019780.1\| hypothetical protein PC1_4230 [Pectobacterium carotovorum subsp. ca... gi\|227327113 - gi\|227327113\|ref\|ZP_03831137.1\| hypothetical protein PcarcW_07249 [Pectobacterium carotovorum subsp....	156.0	[0..1]	[89..1]
gi\|84780736, gi\|... - gi\|85060216\|ref\|YP_455918.1\| hypothetical protein SG2238 [Sodalis glossinidius str. 'morsitans'], gi...	156.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCHRVNELI ELLHPAWQQE PDLNLVQFLQ KLAAEAGFKG DFSDLTDDVL IYHLKMRGAA  60
   61 STEVIPGLKK DYEEDFKTAL LRARGIIKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.657577
Match:	PF06288.4
Description:	No description for PF06288.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits