YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165989480, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165989480, gi....

Description	E-value	Query Range	Subject Range
gi\|77974742 - gi\|77974742\|ref\|ZP_00830281.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia freder...	160.0	[0..1]	[144..1]
gi\|153947960, gi... - gi\|77632095\|ref\|ZP_00794681.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia pseudo...	159.0	[0..1]	[144..1]
gi\|85711976, gi\|... - gi\|85711976\|ref\|ZP_01043030.1\| Oligoketide cyclase/lipid transport protein, putative [Idiomarina bal...	159.0	[0..1]	[143..1]
gi\|116052914, gi... - gi\|53726414\|ref\|ZP_00347572.1\| COG2867: Oligoketide cyclase/lipid transport protein [Pseudomonas aer...	158.0	[0..3]	[143..4]
gi\|95108993, gi\|... - gi\|95108993\|emb\|CAK13689.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047800... gi\|95108993 - gi\|95108993\|emb\|CAK13689.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	158.0	[0..3]	[143..4]
gi\|67084600, gi\|... - gi\|67158727\|ref\|ZP_00419588.1\| Protein of unknown function UPF0083 [Azotobacter vinelandii AvOP], gi... gi\|67158727, gi\|... - gi\|67158727\|ref\|ZP_00419588.1\| Protein of unknown function UPF0083 [Azotobacter vinelandii AvOP], re...	158.0	[0..1]	[143..1]
gi\|238796718, gi... - gi\|77963357\|ref\|ZP_00827167.1\| COG2867: Oligoketide cyclase/lipid transport protein [Yersinia mollar...	158.0	[0..1]	[142..1]
gi\|218774090, gi... - gi\|218893862\|ref\|YP_002442731.1\| putative lipid transport protein [Pseudomonas aeruginosa LESB58], g... gi\|194549483, gi... - gi\|84317353\|ref\|ZP_00965801.1\| COG2867: Oligoketide cyclase/lipid transport protein [Pseudomonas aer... gi\|254244332, gi... - gi\|84323577\|ref\|ZP_00971646.1\| COG2867: Oligoketide cyclase/lipid transport protein [Pseudomonas aer... RATA_PSEAE - Ribosome association toxin RatA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /... YBG7_PSEAE, Y476... - (O68560) Hypothetical UPF0083 protein PA4767, UPF0083 protein PA4767 OS=Pseudomonas aeruginosa GN=PA... gi\|107103864 - gi\|107103864\|ref\|ZP_01367782.1\| hypothetical protein PaerPA_01004935 [Pseudomonas aeruginosa PACS2]	158.0	[0..3]	[143..4]
gi\|21959995, gi\|... - gi\|22126954\|ref\|NP_670377.1\| hypothetical protein y3078 [Yersinia pestis KIM], gi\|21959995\|gb\|AAM866... gi\|45435746, gi\|... - gi\|45440888\|ref\|NP_992427.1\| hypothetical protein YP_1054 [Yersinia pestis biovar Microtus str. 9100...	158.0	[0..1]	[144..35]
gi\|56460005, gi\|... - gi\|56460005\|ref\|YP_155286.1\| oligoketide cyclase/lipid transport protein, putative [Idiomarina loihi...	157.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQISRSALV PFSVKQMYQL VNDVRSYPEF LPGCTGSRVL DATENEMIAA VDVAKAGISK  60
   61 TFTTRNTLTD NQSINMQLVD GPFRKLMGGW HFTPLSADAC KVELHLDFEF TNKLIELAFG 120
  121 KIFKELAGNM VQAFTQRAKE VYSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits