YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168789989, gi...
Organism:	Escherichia coli O157:H7 str. EC869
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168789989, gi....

Description	E-value	Query Range	Subject Range
gi\|90329084, gi\|... - gi\|90409731\|ref\|ZP_01217748.1\| putative lipid A biosynthesis lauroyl acyltransferase [Photobacterium...	321.0	[0..3]	[306..5]
gi\|26107594, gi\|... - gi\|26247193\|ref\|NP_753233.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli CFT073],... gi\|237706961, gi... - gi\|237706961\|ref\|ZP_04537442.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia sp. 3_2_53... gi\|91210205, gi\|... - gi\|91210205\|ref\|YP_540191.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli UTI89], ...	321.0	[0..1]	[306..22]
gi\|54303638, gi\|... - gi\|54303638\|ref\|YP_133631.1\| putative lipid A biosynthesis lauroyl acyltransferase [Photobacterium p...	319.0	[0..3]	[306..5]
gi\|110805073, gi... - gi\|110805073\|ref\|YP_688593.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella flexneri 5 str.... gi\|24112466, gi\|... - ref\|NP_706976.1\| hypothetical protein SF1061 [Shigella flexneri 2a str. 301], gb\|AAN42683.1\| orf, c...	318.0	[0..1]	[306..22]
gi\|161486253 - gi\|161486253\|ref\|NP_753233.2\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli CFT073] gi\|218557936, gi... - gi\|218557936\|ref\|YP_002390849.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli S88]... gi\|218689008, gi... - gi\|218689008\|ref\|YP_002397220.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli ED1a... gi\|227836793, gi... - gi\|227886589\|ref\|ZP_04004394.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli 83972... gi\|117623241, gi... - gi\|117623241\|ref\|YP_852154.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli APEC O1...	317.0	[0..1]	[306..1]
gi\|110641231, gi... - gi\|110641231\|ref\|YP_668961.1\| lipid A biosynthesis lauroyl acyltransferase [Escherichia coli 536], g... gi\|191172396, gi... - gi\|75240651\|ref\|ZP_00724568.1\| COG1560: Lauroyl/myristoyl acyltransferase [Escherichia coli F11], gi...	316.0	[0..1]	[306..1]
gi\|74311616, gi\|... - gi\|74311616\|ref\|YP_310035.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella sonnei Ss046], g...	315.0	[0..1]	[306..1]
gi\|30062592, gi\|... - gi\|30062592\|ref\|NP_836763.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella flexneri 2a str.... gi\|56479807, gi\|... - gi\|56479807\|ref\|NP_706976.2\| lipid A biosynthesis lauroyl acyltransferase [Shigella flexneri 2a str....	315.0	[0..1]	[306..1]
gi\|81241660, gi\|... - gi\|82777512\|ref\|YP_403861.1\| lipid A biosynthesis lauroyl acyltransferase [Shigella dysenteriae Sd19...	314.0	[0..1]	[306..1]
gi\|194419264, gi... - gi\|83570498\|ref\|ZP_00921942.1\| COG1560: Lauroyl/myristoyl acyltransferase [Shigella dysenteriae 1012...	313.0	[0..1]	[306..1]

Back

Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLPKFSTA LLHPRYWLTW LGIGVLWLVV QLPYPVIYRL GCGLGKLALR FMKRRAKIVH  60
   61 RNLELCFPEM SEQERRKMVV KNFESVGMGL METGMAWFWP DRRIARWTEV IGMEHIRDVQ 120
  121 AQKRGILLVG IHFLTLELGA RQFGMQEPGI GVYRPNDNPL IDWLQTWGRL RSNKSMLDRK 180
  181 DLKGMIKALK KGEVVWYAPD HDYGPRSSVF VPLFAVEQAA TTTGTWMLAR MSGACLVPFV 240
  241 PRRKPDGKGY QLIMLPPECS PPLDDAETTA AWMNKVVEKC IMMAPEQYMW LHRRFKTRPE 300
  301 GVPSRY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.21
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits