YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186897233, gi...
Organism:	Yersinia pseudotuberculosis PB1/+
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186897233, gi....

Description	E-value	Query Range	Subject Range
gi\|152958604, gi... - gi\|77631138\|ref\|ZP_00793724.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis IP...	0.0	[1..346]	[1..346]
gi\|68057414, gi\|... - gi\|68249215\|ref\|YP_248327.1\| tryptophanyl-tRNA synthetase [Haemophilus influenzae 86-028NP], gi\|6805...	0.0	[15..344]	[5..334]
gi\|77958284 - gi\|77958284\|ref\|ZP_00822320.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970...	0.0	[14..346]	[14..346]
gi\|77962693, gi\|... - gi\|77962693\|ref\|ZP_00826510.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969...	0.0	[1..346]	[1..346]
SYW_HAEIN - Tryptophanyl-tRNA synthetase OS=Haemophilus influenzae GN=trpS PE=3 SV=1 SYW_HAEIN - Tryptophan--tRNA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trp...	0.0	[15..344]	[3..332]
gi\|85060282, gi\|... - gi\|85060282\|ref\|YP_455984.1\| tryptophanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'], gi\|...	0.0	[14..346]	[2..334]
gi\|229809654, gi... - gi\|229847416\|ref\|ZP_04467516.1\| tryptophanyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|229... gi\|46133005 - gi\|46133005\|ref\|ZP_00156437.2\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus influenzae R2866] gi\|42628929 - gi\|42628929\|ref\|ZP_00154481.1\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus influenzae R2846]	0.0	[15..344]	[3..332]
SYW_YERPE - Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2	0.0	[6..346]	[2..342]
gi\|50123007, gi\|... - gi\|50123007\|ref\|YP_052174.1\| tryptophanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043], gi...	0.0	[14..346]	[2..334]
gi\|62129616, gi\|... - gi\|62181983\|ref\|YP_218400.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serov... gi\|194712434, gi... - gi\|194736932\|ref\|YP_002116424.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|197214009, gi... - gi\|197250306\|ref\|YP_002148402.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|197265141, gi... - gi\|197265141\|ref\|ZP_03165215.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|197938888, gi... - gi\|198244372\|ref\|YP_002217442.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|205344545, gi... - gi\|205344545\|gb\|EDZ31309.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|194443252, gi... - gi\|194443252\|ref\|YP_002042731.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|194450001, gi... - gi\|194450001\|ref\|YP_002047505.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|194470509, gi... - gi\|194470509\|ref\|ZP_03076493.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|197291441, gi... - gi\|197291441\|gb\|EDY30793.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|168241618, gi... - gi\|205339049\|gb\|EDZ25813.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|205350255, gi... - gi\|205350255\|gb\|EDZ36886.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|168465255, gi... - gi\|195632456\|gb\|EDX50940.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|161616517, gi... - gi\|161616517\|ref\|YP_001590482.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|205325695, gi... - gi\|205325695\|gb\|EDZ13534.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|205327596, gi... - gi\|205327596\|gb\|EDZ14360.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|205333050, gi... - gi\|205333050\|gb\|EDZ19814.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... gi\|213648700 - gi\|213648700\|ref\|ZP_03378753.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213865258 - gi\|213865258\|ref\|ZP_03387377.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|214000217 - gi\|214000217\|ref\|ZP_03410952.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213053384 - gi\|213053384\|ref\|ZP_03346262.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213423406 - gi\|213423406\|ref\|ZP_03356393.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213426749 - gi\|213426749\|ref\|ZP_03359499.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYW_SALTY - Tryptophan--tRNA ligase OS=Salmonella typhimurium GN=trpS PE=3 SV=1 gi\|213610074 - gi\|213610074\|ref\|ZP_03369900.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|200388951, gi... - gi\|200388951\|ref\|ZP_03215563.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|205274676, gi... - gi\|205354895\|ref\|YP_002228696.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... SYW_SALTY - Tryptophanyl-tRNA synthetase OS=Salmonella typhimurium GN=trpS PE=3 SV=1 gi\|207858721, gi... - gi\|207858721\|ref\|YP_002245372.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica s... gi\|213026556 - gi\|213026556\|ref\|ZP_03341003.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|238913604 - gi\|238913604\|ref\|ZP_04657441.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYW_SALTI - Tryptophanyl-tRNA synthetase OS=Salmonella typhi GN=trpS PE=3 SV=1 lcl\|NC_016856.1_... - [gene=trpS] [protein=tryptophanyl-tRNA synthetase] [protein_id=YP_005239679.1] [location=complement(... SYW_SALTI - Tryptophan--tRNA ligase OS=Salmonella typhi GN=trpS PE=3 SV=1 gi\|16762806 - gi\|16762806\|ref\|NP_458423.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serov... SYW_SALTY - Tryptophan--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpS PE=3... gi\|29144293, gi\|... - gi\|29144293\|ref\|NP_807635.1\| tryptophanyl-tRNA synthetase [Salmonella enterica subsp. enterica serov...	0.0	[15..346]	[3..334]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPMVLSKP TVSSKPIVFS GAQPSGELTI GNYMGALRQW VQMQDDYDCI YCIVDLHAIT  60
   61 ARQDPALLRK RTLDTLALYL ACGIDPKKST IFVQSHVPEH SQLSWALNCY TYFGELSRMT 120
  121 QFKDKSARYA ENINAGLFDY PVLMAADILL YQTNQVPVGE DQKQHLELSR DIASRFNNLY 180
  181 GDIFKIPEPF IPKAGARVMS LQDPTKKMSK SDDNRNNVIE LLEDPKSVVK KIKRAMTDSD 240
  241 EPALIRYDVE KKAGVSNLLD ILSGVTGQSI PELEAQFTGQ MYGHLKGAVA DAVSGMLSEL 300
  301 QERYRTYRED EALLQDVMRE GAAKARARAQ VTLAKVYEAI GFVAQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1i6kA
Description:	Tryptophanyl-tRNA synthetase (TrpRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits