YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166009792, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166009792, gi....

Description	E-value	Query Range	Subject Range
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	0.0	[1..430]	[182..607]
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1 SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... gi\|254235598, gi... - gi\|84320581\|ref\|ZP_00968954.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi\|254... gi\|194552030, gi... - gi\|84326939\|ref\|ZP_00974963.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi\|2542... SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1 SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1 gi\|107102134 - gi\|107102134\|ref\|ZP_01366052.1\| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]	0.0	[1..430]	[1..426]
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	0.0	[1..430]	[1..426]
SYS_SHIB3 - Serine--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=serS PE=3 SV=1	0.0	[1..430]	[1..430]
gi\|193070743, gi... - gi\|75234424\|ref\|ZP_00718785.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E110019], gi\|1930707...	0.0	[1..430]	[1..430]
SYS_ECO7I - Serine--tRNA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=serS PE=3 SV=1 SYS_ECOLU - Serine--tRNA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=serS PE=3 SV=1 SYS_ECO5E - Serine--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=serS PE=3 SV=1 SYS_ECOSE - Serine--tRNA ligase OS=Escherichia coli (strain SE11) GN=serS PE=3 SV=1 SYS_ECO27 - Serine--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1 gi\|217326397, gi... - gi\|217326397\|ref\|ZP_03442481.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi\|21... SYS_ECO8A - Serine--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=serS PE=3 SV=1 SYS_ECO45 - Serine--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=serS PE=3 SV=1 SYS_ECO81 - Serine--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=serS PE=3 SV=1 SYS_ECO55 - Serine--tRNA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=serS PE=3 SV=1 sp\|B7UMY4\|SYS_ECO27 - Seryl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1 SYS_SHISS - Serine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=serS PE=3 SV=1 SYS_SHIBS - Serine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=serS PE=3 SV=1 gi\|75257392, gi\|... - gi\|75257392\|ref\|ZP_00728908.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E22], gi\|193064674\|r... gi\|188492608, gi... - gi\|75512046\|ref\|ZP_00734631.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli 53638], gi\|188492608... gi\|194438706, gi... - gi\|83585836\|ref\|ZP_00924476.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli 101-1], gi\|194438706... gi\|13360437, gi\|... - gi\|15830232\|ref\|NP_309005.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1336043... gi\|189372720, gi... - gi\|189372720\|gb\|EDU91136.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|16878732... SYS_ECO24 - Serine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=serS PE=3 SV=1 SYS_ECOL5 - Serine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=serS PE=3 SV=1 gi\|189376450, gi... - gi\|189376450\|gb\|EDU94866.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC508], gi\|16880142... SYS_SHIF8 - Serine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=serS PE=3 SV=1 SYS_ECODH - Serine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=serS PE=3 SV=1 SYS_ECOSM - Serine--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serS PE=3 SV=1 gi\|191167614, gi... - gi\|75229261\|ref\|ZP_00715826.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli B7A], gi\|191167614\|r... gi\|195939556 - gi\|195939556\|ref\|ZP_03084938.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|75240970, gi\|... - gi\|75240970\|ref\|ZP_00724859.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli F11], gi\|191172133\|r... gi\|208808989, gi... - gi\|208808989\|ref\|ZP_03251326.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206], gi\|208... SYS_ECOHS - Serine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=serS PE=3 SV=1 gi\|89107743, gi\|... - gi\|89107743\|ref\|AP_001523.1\| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine [E... gi\|208732184, gi... - gi\|208815536\|ref\|ZP_03256715.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|194413610, gi... - gi\|75210418\|ref\|ZP_00710574.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli B171], gi\|194428395\|... SYS_ECOUT - Serine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=serS PE=3 SV=1 gi\|208822033, gi... - gi\|208822033\|ref\|ZP_03262352.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|168752125, gi... - gi\|188013954\|gb\|EDU52076.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|1687521... gi\|189355936, gi... - gi\|189355936\|gb\|EDU74355.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401], gi\|1687569... gi\|168762973, gi... - gi\|189366796\|gb\|EDU85212.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|1687629... gi\|189361156, gi... - gi\|189361156\|gb\|EDU79575.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|1687698... gi\|168776256, gi... - gi\|187768390\|gb\|EDU32234.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|1687762... EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance gi\|168783803, gi... - gi\|188998912\|gb\|EDU67898.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|1687838... SYS_ECOLI - Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Escherichia coli SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6 GN=serS PE=3 SV=1 SYS_SHIFL - Serine--tRNA ligase OS=Shigella flexneri GN=serS PE=3 SV=1 gi\|24112268, gi\|... - gi\|24112268\|ref\|NP_706778.1\| seryl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|24051120\|gb\|A... gi\|254591493, gi... - gi\|254792093\|ref\|YP_003076930.1\| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serin... SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=serS PE=3 SV=1 gi\|254161007, gi... - gi\|254161007\|ref\|YP_003044115.1\| seryl-tRNA synthetase [Escherichia coli B str. REL606], gi\|25397290... gi\|30040626, gi\|... - gi\|30062380\|ref\|NP_836551.1\| seryl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30040626\|gb... gi\|253325122, gi... - gi\|254287815\|ref\|YP_003053563.1\| seryl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253977122\|gb... SYS_ECO57 - Serine--tRNA ligase OS=Escherichia coli O157:H7 GN=serS PE=3 SV=1 gi\|242376708, gi... - gi\|251784435\|ref\|YP_002998739.1\| hypothetical protein B21_00904 [Escherichia coli BL21], gi\|24237670... EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance SYS_ECOBW - Serine--tRNA ligase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=serS PE=3 SV=1 gi\|226898327, gi... - gi\|237707117\|ref\|ZP_04537598.1\| seryl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226898327\|gb\|E... gi\|227838892, gi... - gi\|227884140\|ref\|ZP_04001945.1\| seryl-tRNA synthetase [Escherichia coli 83972], gi\|227838892\|gb\|EEJ4... SYS_ECOLC - Serine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=serS PE=3 SV=1 SYS_ECOK1 - Serine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=serS PE=3 SV=1 gi\|124531982, gi... - gi\|124531982\|ref\|ZP_01702041.1\| seryl-tRNA synthetase [Escherichia coli B], gi\|124498244\|gb\|EAY45765...	0.0	[1..430]	[1..430]
SYS_SHIDS - Serine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=serS PE=3 SV=1	0.0	[1..430]	[1..430]
gi\|25293153 - pir\|\|H85614 hypothetical protein serS [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12514055, gi\|... - gi\|15800756\|ref\|NP_286770.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12514055\|gb...	0.0	[1..430]	[1..430]
gi\|167550365, gi... - gi\|205324587\|gb\|EDZ12426.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saint... gi\|205327478, gi... - gi\|205327478\|gb\|EDZ14242.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|238913262 - gi\|238913262\|ref\|ZP_04657099.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... lcl\|NC_016856.1_... - [gene=serS] [protein=seryl-tRNA synthetase] [protein_id=YP_005236678.1] [location=1002151..1003443] SYS_SALPB - Serine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1 SYS_SALEP - Serine--tRNA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=serS PE=3 SV=1 SYS_SALTI - Serine--tRNA ligase OS=Salmonella typhi GN=serS PE=3 SV=1 gi\|213428591 - gi\|213428591\|ref\|ZP_03361341.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis GN=serS PE=3 SV=1 gi\|213580909 - gi\|213580909\|ref\|ZP_03362735.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213609744 - gi\|213609744\|ref\|ZP_03369570.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|16759834 - gi\|16759834\|ref\|NP_455451.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh... SYS_SALPK - Serine--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=serS PE=3 SV=1 SYS_SALDC - Serine--tRNA ligase OS=Salmonella dublin (strain CT_02021853) GN=serS PE=3 SV=1 SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=serS PE=3 SV=... gi\|200390080, gi... - gi\|200390080\|ref\|ZP_03216691.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar V... gi\|29138023, gi\|... - gi\|29142393\|ref\|NP_805735.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh... SYS_SALG2 - Serine--tRNA ligase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=serS PE=3 SV=1 SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=serS PE=3 SV=1 SYS_SALNS - Serine--tRNA ligase OS=Salmonella newport (strain SL254) GN=serS PE=3 SV=1 SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=serS PE=3 SV=1 gi\|194457722, gi... - gi\|194471358\|ref\|ZP_03077342.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar K... SYS_SALA4 - Serine--tRNA ligase OS=Salmonella agona (strain SL483) GN=serS PE=3 SV=1 SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium GN=serS PE=3 SV=1 gi\|197241068, gi... - gi\|197262813\|ref\|ZP_03162887.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar S... gi\|168230857, gi... - gi\|205334663\|gb\|EDZ21427.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentu... gi\|205347703, gi... - gi\|205347703\|gb\|EDZ34334.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar... gi\|168466548, gi... - gi\|195631016\|gb\|EDX49602.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newpo... gi\|205340753, gi... - gi\|205340753\|gb\|EDZ27517.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Welte... gi\|213851472 - gi\|213851472\|ref\|ZP_03381370.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|214003461 - gi\|214003461\|ref\|ZP_03414196.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... SYS_SALTI - Seryl-tRNA synthetase OS=Salmonella typhi GN=serS PE=3 SV=1 SYS_SALTY - Seryl-tRNA synthetase OS=Salmonella typhimurium GN=serS PE=3 SV=1 SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A GN=serS PE=3 SV=1 SYS_SALPB - Seryl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1 SYS_SALCH - Seryl-tRNA synthetase OS=Salmonella choleraesuis GN=serS PE=3 SV=1	0.0	[1..430]	[1..430]
SYS_PSEF5 - Serine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=serS PE=3 SV=1	0.0	[1..430]	[1..426]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPNMLRNE LDAVAEKLAR RGFKLDVEVL RQQEERRKVL QVETESLQAE RNSRSKQIGA  60
   61 AKARGEDIEP LRLEVNALGE KLDAAKAELD KLQNEIRDLA LSIPNLPDDS VPVGKNENDN 120
  121 IEVSRWGEPR KYDFDVKDHV SLGEMAGGLD FAAAVKLTGA RFVVMKGQIA RMHRALSQFM 180
  181 LDLHTEKHGY LEAYVPYLVN HATLYGTGQL PKFGEDLFHT KPLAEESDNS NYALIPTAEV 240
  241 PLTNLVRDEI LEEDSLPLKL TAHTPCFRSE AGSYGRDTRG LIRMHQFDKV EMVQITRPED 300
  301 SMAALEELTG HAEKVLQLLE LPYRKVLLCT GDMGFGSSKT YDLEVWLPAQ DTYREISSCS 360
  361 NMWDFQARRM QARYRNKTDR KTRLVHTLNG SGLAVGRTLV AVLENYQQAD GRIQVPDVLR 420
  421 PYMGGLEYIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits