YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167424484, gi...
Organism:	Yersinia pestis biovar Mediaevalis str. K1973002
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167424484, gi....

Description	E-value	Query Range	Subject Range
Y1932_BURXL - UPF0303 protein Bxeno_A1932 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A1932 PE=3 SV=1	1.0E-45	[1..162]	[1..162]
gi\|67530726, gi\|... - gi\|67548007\|ref\|ZP_00425903.1\| Protein of unknown function DUF967 [Burkholderia vietnamiensis G4], g...	3.0E-44	[1..163]	[19..181]
gi\|152406 - gi\|152406\|gb\|AAA26355.1\| ORF1; putative [Sinorhizobium meliloti]	7.0E-44	[1..164]	[1..164]
YT83_RHIME, Y298... - (P29953) Hypothetical UPF0303 protein R02983, UPF0303 protein R02983 OS=Rhizobium meliloti GN=R02983... Y2983_RHIME - UPF0303 protein R02983 OS=Rhizobium meliloti (strain 1021) GN=R02983 PE=3 SV=2	9.0E-44	[1..164]	[1..164]
Y1459_BURCM - UPF0303 protein Bamb_1459 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_1459 PE=3 S...	2.0E-42	[1..162]	[1..162]
Y4700_BURL3 - UPF0303 protein Bcep18194_A4700 OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R... Y4700_BURS3 - UPF0303 protein Bcep18194_A4700 OS=Burkholderia sp. (strain 383) GN=Bcep18194_A4700 PE=3 SV=1	2.0E-42	[1..162]	[1..162]
gi\|254252488, gi... - gi\|84361653\|ref\|ZP_00986308.1\| COG4702: Uncharacterized conserved protein [Burkholderia dolosa AUO15...	3.0E-42	[1..162]	[1..162]
Y2872_SINMW - UPF0303 protein Smed_2872 OS=Sinorhizobium medicae (strain WSM419) GN=Smed_2872 PE=3 SV=1	3.0E-42	[1..164]	[1..164]
Y1078_BURCA - UPF0303 protein Bcen_1078 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_1078 PE=3 SV=1 gi\|84357658, gi\|... - gi\|84357658\|ref\|ZP_00982471.1\| COG4702: Uncharacterized conserved protein [Burkholderia cenocepacia ... Y1558_BURCH - UPF0303 protein Bcen2424_1558 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_1558 PE=3 SV=1 Y1534_BURCC - UPF0303 protein Bcenmc03_1534 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_1534 PE=3 SV=1	1.0E-41	[1..162]	[1..162]
Y1353_ZYMMO, Y30... - (Q9XBS9) Hypothetical UPF0303 protein Zm10ORF2, UPF0303 protein ZMO1353 OS=Zymomonas mobilis GN=ZMO1... Y1353_ZYMMO - UPF0303 protein ZMO1353 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO13... gi\|241373993, gi... - gi\|241761685\|ref\|ZP_04759772.1\| protein of unknown function DUF336 [Zymomonas mobilis subsp. mobilis...	2.0E-41	[1..164]	[7..172]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQQQLAYC QQHQQRLQLR HFDNETAWQL GEKIKRQAEK QGVALAIDIT VNHQTLFSYA  60
   61 MAGTCAENQD WLRRKRNVVE LLSTSSYAAG LMLQQRETSL DARYGVSLRD YAALGGAFPL 120
  121 QIKQAGIIGS VNVSGAPHLD DHNLLLQVLA DFVGLPTGSI ELLTPLTPLS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	2a2lA
Description:	Crystal structure of Klebsiella pneumoniae hypothetical protein ORFY, New York Structural Genomics Consortium
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits