YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165991028, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165991028, gi....

Description	E-value	Query Range	Subject Range
SURE_YERPS - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis GN=surE PE=3 SV=1 SURE_YERP3 - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=surE PE=3 ... SURE_YERPS - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=surE PE=3 SV=1 SURE_YERPY - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=surE PE=3 SV=1 SURE_YERPB - 5'/3'-nucleotidase SurE OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=surE PE=3 SV=1	0.0	[1..254]	[1..254]
gi\|26109557, gi\|... - gi\|26249150\|ref\|NP_755190.1\| stationary phase survival protein SurE [Escherichia coli CFT073], gi\|26... gi\|91212112, gi\|... - gi\|91212112\|ref\|YP_542098.1\| stationary phase survival protein SurE [Escherichia coli UTI89], gi\|910...	0.0	[1..254]	[15..268]
gi\|882637\|gb\|AAA... - alternate name ygbC; ORF1 of L07942, has different start due to frameshift in L07942; ORF_f255 gi\|254037786, gi... - gi\|254037786\|ref\|ZP_04871844.1\| stationary phase survival protein SurE [Escherichia sp. 1_1_43], gi\|... gi\|226899667, gi... - gi\|237706627\|ref\|ZP_04537108.1\| stationary phase survival protein SurE [Escherichia sp. 3_2_53FAA], ... gi\|882637 - gi\|882637\|gb\|AAA69254.1\| alternate name ygbC; ORF1 of L07942, has different start due to frameshift ... gi\|194414038, gi... - gi\|194427805\|ref\|ZP_03060351.1\| multifunctional protein SurE [Escherichia coli B171], gi\|194414038\|g... gi\|192927339, gi... - gi\|193065042\|ref\|ZP_03046117.1\| multifunctional protein SurE [Escherichia coli E22], gi\|192927339\|gb... gi\|170681369, gi... - gi\|170681369\|ref\|YP_001744893.1\| multifunctional protein SurE [Escherichia coli SMS-3-5], gi\|1705190...	0.0	[1..254]	[2..255]
gi\|12517198, gi\|... - gi\|15803261\|ref\|NP_289293.1\| stationary phase survival protein SurE [Escherichia coli O157:H7 EDL933... EG11817 - broad specificity 5'(3')-nucleotidase and polyphosphatase / UMP phosphatase, nucleotidase, 5- or 3'-... gi\|227888287, gi... - gi\|227888287\|ref\|ZP_04006092.1\| multifunctional protein SurE [Escherichia coli 83972], gi\|227834556\|... SURE_ECOK1 - 5'/3'-nucleotidase SurE OS=Escherichia coli O1:K1 / APEC GN=surE PE=3 SV=1 SURE_ECOBW - 5'/3'-nucleotidase SurE OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=surE PE=3 SV=1 gi\|124529899, gi... - gi\|124529899\|ref\|ZP_01700743.1\| stationary-phase survival protein SurE [Escherichia coli B], gi\|1244... gi\|242378299, gi... - gi\|251786026\|ref\|YP_003000330.1\| hypothetical protein B21_02559 [Escherichia coli BL21], gi\|24237829... gi\|254289436, gi... - gi\|254289436\|ref\|YP_003055184.1\| acid phosphatase [Escherichia coli BL21(DE3)], gi\|253978743\|gb\|ACT4... SURE_ECO57 - 5'/3'-nucleotidase SurE OS=Escherichia coli O157:H7 GN=surE PE=3 SV=1 gi\|13363069, gi\|... - gi\|15832852\|ref\|NP_311625.1\| stationary phase survival protein SurE [Escherichia coli O157:H7 str. S... gi\|253974576, gi... - gi\|254162675\|ref\|YP_003045783.1\| acid phosphatase [Escherichia coli B str. REL606], gi\|253974576\|gb\|... SURE_ECOL5 - 5'/3'-nucleotidase SurE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=surE PE=3 SV=1 gi\|254594084, gi... - gi\|254794684\|ref\|YP_003079521.1\| broad specificity 5'(3')-nucleotidase and polyphosphatase [Escheric... EG11817 - broad specificity 5'(3')-nucleotidase and polyphosphatase / UMP phosphatase, nucleotidase, 5- or 3'-... gi\|190908558, gi... - gi\|75241865\|ref\|ZP_00725684.1\| COG0496: Predicted acid phosphatase [Escherichia coli F11], gi\|191171... gi\|75256950 - gi\|75256950\|ref\|ZP_00728526.1\| COG0496: Predicted acid phosphatase [Escherichia coli E22] gi\|75230045, gi\|... - gi\|75230045\|ref\|ZP_00716555.1\| COG0496: Predicted acid phosphatase [Escherichia coli B7A], gi\|191166... SURE_ECOUT - 5'/3'-nucleotidase SurE OS=Escherichia coli (strain UTI89 / UPEC) GN=surE PE=3 SV=2 gi\|75235657, gi\|... - gi\|75235657\|ref\|ZP_00719831.1\| COG0496: Predicted acid phosphatase [Escherichia coli E110019], gi\|19... SURE_ECOLC - 5'/3'-nucleotidase SurE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=surE PE=3 SV=1 SURE_SHIBS - 5'/3'-nucleotidase SurE OS=Shigella boydii serotype 4 (strain Sb227) GN=surE PE=3 SV=1 gi\|85675565, gi\|... - gi\|89109531\|ref\|AP_003311.1\| broad specificity 5'(3')-nucleotidase and polyphosphatase [Escherichia ... gi\|188490759, gi... - gi\|75512345\|ref\|ZP_00734897.1\| COG0496: Predicted acid phosphatase [Escherichia coli 53638], gi\|1884... SURE_SHISS - 5'/3'-nucleotidase SurE OS=Shigella sonnei (strain Ss046) GN=surE PE=3 SV=1 gi\|189377525, gi... - gi\|189377525\|gb\|EDU95941.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|83585597, gi\|... - gi\|83585597\|ref\|ZP_00924240.1\| COG0496: Predicted acid phosphatase [Escherichia coli 101-1], gi\|1944... gi\|189372089, gi... - gi\|189372089\|gb\|EDU90505.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC869], gi\|1... SURE_ECOL6 - 5'/3'-nucleotidase SurE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=surE PE=3 ... gi\|194420049, gi... - gi\|194431693\|ref\|ZP_03063984.1\| multifunctional protein SurE [Shigella dysenteriae 1012], gi\|1944200... SURE_ECODH - 5'/3'-nucleotidase SurE OS=Escherichia coli (strain K12 / DH10B) GN=surE PE=3 SV=1 SURE_ECOHS - 5'/3'-nucleotidase SurE OS=Escherichia coli O9:H4 (strain HS) GN=surE PE=3 SV=1 gi\|208725827, gi... - gi\|208806026\|ref\|ZP_03248363.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4206],... gi\|75210951 - gi\|75210951\|ref\|ZP_00711075.1\| COG0496: Predicted acid phosphatase [Escherichia coli B171] gi\|195939457 - gi\|195939457\|ref\|ZP_03084839.1\| stationary phase survival protein SurE [Escherichia coli O157:H7 str... SURE_SHIB3 - 5'/3'-nucleotidase SurE OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=surE PE=3 SV=... gi\|208739223, gi... - gi\|208819100\|ref\|ZP_03259420.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4042],... SURE_ECO24 - 5'/3'-nucleotidase SurE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=surE PE=3 SV=1 gi\|208812185, gi... - gi\|208812185\|ref\|ZP_03253514.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4045],... SURE_ECOLI - Multifunctional protein surE (Stationary-phase survival protein surE) [Includes: 5'/3'-nucleotidase ... gi\|168755491, gi... - gi\|189357300\|gb\|EDU75719.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|188015752, gi... - gi\|188015752\|gb\|EDU53874.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|189362028, gi... - gi\|189362028\|gb\|EDU80447.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|168762854, gi... - gi\|189366855\|gb\|EDU85271.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189003425, gi... - gi\|189003425\|gb\|EDU72411.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168774721, gi... - gi\|187769574\|gb\|EDU33418.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. EC4196], gi\|... SURE_ECOSE - 5'/3'-nucleotidase SurE OS=Escherichia coli (strain SE11) GN=surE PE=3 SV=1 SURE_ECO5E - 5'/3'-nucleotidase SurE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=surE PE=3 SV=1 SURE_ECO45 - 5'/3'-nucleotidase SurE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=surE PE=3 SV=1 gi\|217327563, gi... - gi\|217327563\|ref\|ZP_03443646.1\| multifunctional protein SurE [Escherichia coli O157:H7 str. TW14588]... SURE_ECO55 - 5'/3'-nucleotidase SurE OS=Escherichia coli (strain 55989 / EAEC) GN=surE PE=3 SV=1 SURE_ECO81 - 5'/3'-nucleotidase SurE OS=Escherichia coli O81 (strain ED1a) GN=surE PE=3 SV=1 SURE_ECOL6 - 5'/3'-nucleotidase SurE OS=Escherichia coli O6 GN=surE PE=3 SV=1	0.0	[2..254]	[1..253]
gi\|110616173, gi... - gi\|110806625\|ref\|YP_690145.1\| stationary phase survival protein SurE [Shigella flexneri 5 str. 8401]...	0.0	[1..254]	[15..268]
SURE_SHIDS - 5'/3'-nucleotidase SurE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=surE PE=3 SV=1	0.0	[2..254]	[1..253]
gi\|77956578 - gi\|77956578\|ref\|ZP_00820667.1\| COG0496: Predicted acid phosphatase [Yersinia bercovieri ATCC 43970]	0.0	[1..254]	[3..257]
gi\|77976007 - gi\|77976007\|ref\|ZP_00831540.1\| COG0496: Predicted acid phosphatase [Yersinia frederiksenii ATCC 3364...	0.0	[1..254]	[1..259]
gi\|77962845 - gi\|77962845\|ref\|ZP_00826661.1\| COG0496: Predicted acid phosphatase [Yersinia mollaretii ATCC 43969]	0.0	[1..254]	[3..257]
gi\|77979631 - gi\|77979631\|ref\|ZP_00835048.1\| COG0496: Predicted acid phosphatase [Yersinia intermedia ATCC 29909]	0.0	[1..247]	[1..247]

Back

Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRILLSNDD GISAPGIQTL ASALRGFAQV QIVAPDRNRS GASNALTLDS ALRITTLSNG  60
   61 DIAVQQGTPT DCVYLGVNAL MRPRPDIVVS GINAGPNLGD DVIYSGTVAA AMEGRHLGYP 120
  121 ALAVSLNGHQ HYDTAAAVTC RLLRALQRKP LRTGKILNIN VPDLPLAEIK GIRVTRCGSR 180
  181 HPAEQVFCQQ DPRGQDLYWI GPPGEKYDAG PDTDFAAVEQ GYVSITPLQV DLTAYMAQEV 240
  241 VESWLANTEV DGEW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2phjA
Description:	No description for 2phjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits