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View Structure Prediction Details

Protein: NDB2_ARATH
Organism: Arabidopsis thaliana
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDB2_ARATH.

Description E-value Query
Range
Subject
Range
gi|7267261, gi|5... - gi|7267261|emb|CAB81044.1| AT4g05020 [Arabidopsis thaliana], gi|5732076|gb|AAD48975.1|AF162444_7 con...
349.0 [0..1] [582..1]

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Predicted Domain #1
Region A:
Residues: [1-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK  60
   61 VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP SVTCGTVEAR SVVEPIRNIG 120
  121 RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP 180
  181 GVEENCHFLK EVEDAQRIRK TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE 240
  241 LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV 300
  301 TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV 360
  361 EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT LKEFQEAMDD ICVRYPQVEL 420
  421 YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA 480
  481 YLAKCFDRME ECEKSPEGPI RMRGEGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.221849
Match: 1zy8A
Description: The crystal structure of dihydrolipoamide dehydrogenase and dihydrolipoamide dehydrogenase-binding protein (didomain) subcomplex of human pyruvate dehydrogenase complex.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [508-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRFRPFRYRH LGQFAPLGGE QTAAQLPGDW VSIGHSSQWL WYSVYASKQV SWRTRVLVVS  60
   61 DWMRRFIFGR DSSSI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle