YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27065489, gi\|...
Organism:	Escherichia coli
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27065489, gi|....

Description	E-value	Query Range	Subject Range
gi\|68526905, gi\|... - gi\|94152516\|ref\|YP_581923.1\| copper resistance protein CopC [Ralstonia metallidurans CH34], gi\|93358...	131.0	[0..1]	[104..29]
gi\|38259453, gi\|... - gi\|38347976\|ref\|NP_941225.1\| exported copper resistance protein [Serratia marcescens], gi\|38259453\|e... PCOC_ECOLI - Copper resistance protein C precursor - Escherichia coli (strain K12) gi\|157412134 - gi\|157412134\|ref\|YP_001481475.1\| PcoC [Escherichia coli APEC O1] gi\|156534605, gi... - gi\|156936351\|ref\|YP_001440267.1\| hypothetical protein ESA_04251 [Enterobacter sakazakii ATCC BAA-894... gi\|150958289, gi... - gi\|152973497\|ref\|YP_001338548.1\| copper resistant protein PcoC [Klebsiella pneumoniae subsp. pneumon... gi\|218697174, gi... - gi\|218697174\|ref\|YP_002404841.1\| Copper resistance protein C precursor [Escherichia coli 55989], gi\|... gi\|238910407 - gi\|238910407\|ref\|ZP_04654244.1\| PcoC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC... gi\|169756332, gi... - gi\|170021404\|ref\|YP_001726358.1\| copper resistance protein CopC [Escherichia coli ATCC 8739], gi\|169... PCOC_ECOLX - Copper resistance protein C OS=Escherichia coli GN=pcoC PE=1 SV=1 gi\|168998676, gi... - gi\|238549692\|dbj\|BAH66043.1\| exported copper resistance protein [Klebsiella pneumoniae NTUH-K2044], ... gi\|38016803, gi\|... - gi\|38639705\|ref\|NP_943474.1\| copper resistant protein PcoC [Klebsiella pneumoniae], gi\|38016803\|gb\|A...	129.0	[0..1]	[104..23]
gi\|113530618, gi... - gi\|116696119\|ref\|YP_841695.1\| copper resistance protein C [Ralstonia eutropha H16], gi\|113530618\|emb...	128.0	[0..1]	[104..25]
gi\|48729978, gi\|... - gi\|77460034\|ref\|YP_349541.1\| copper resistance protein CopC [Pseudomonas fluorescens Pf0-1], gi\|7738...	124.0	[0..1]	[104..22]
gi\|14331038 - gi\|14331038\|emb\|CAC41102.1\| CopC protein [Pseudomonas fluorescens]	124.0	[0..1]	[104..22]
gi\|32815825 - gi\|32815825\|gb\|AAP88297.1\| CopC [Pseudomonas putida]	124.0	[0..1]	[104..22]
gi\|63255449, gi\|... - gi\|66044742\|ref\|YP_234583.1\| copper resistance protein CopC [Pseudomonas syringae pv. syringae B728a...	119.0	[0..1]	[104..24]
COPC_PSEUB - Copper resistance protein C OS=Pseudomonas syringae pv. tomato GN=copC PE=1 SV=1 gi\|151190 - gi\|151190\|gb\|AAA25808.1\| copC peptide	118.0	[0..1]	[104..24]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHPELKSSVP QADSAVAAPE KIQLNFSENL TVKFSGAKLT MTGMKGMSSH SPMPVAAKVA  60
   61 PGADPKSMVI IPREPLPAGT YRVDWRAVSS DTHPITGNYT FTVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1ix2A
Description:	Copper resistance protein C (CopC, PcoC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits