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View Structure Prediction Details

Protein: gi|25090173, gi|...
Organism: Arabidopsis thaliana
Length: 783 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25090173, gi|....

Description E-value Query
Range
Subject
Range
gi|91086195 - gi|91086195|ref|XP_971475.1| PREDICTED: similar to protein transport protein sec23 [Tribolium castan...
943.0 [0..1] [783..1]

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Predicted Domain #1
Region A:
Residues: [1-783]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR  60
   61 ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET NVPCELYPQY TTVEYTLPNP 120
  121 SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV 180
  181 SFGTQAHVHE LGFSDLTKVY VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN 240
  241 FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP 300
  301 GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN 360
  361 QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS VFKDSFKRVF EDGEESLGLC 420
  421 FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF 480
  481 DLSSSDQSSA PGGVNNQLYL QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ 540
  541 ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ 600
  601 FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV 660
  661 ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ AFAQLLEAPQ EDAQMIIRDR 720
  721 FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA 780
  781 VQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nupA
Description: No description for 2nupA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle