YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28373820, gi\|...
Organism:	Escherichia coli
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28373820, gi|....

Description	E-value	Query Range	Subject Range
gi\|27361302, gi\|... - gi\|27365156\|ref\|NP_760684.1\| hypothetical protein VV1_1803 [Vibrio vulnificus CMCP6], gi\|27361302\|gb...	197.0	[0..8]	[135..16]
gi\|37680790, gi\|... - gi\|37680790\|ref\|NP_935399.1\| hypothetical protein VV2606 [Vibrio vulnificus YJ016], gi\|37199539\|dbj\|...	195.0	[0..8]	[135..22]
gi\|91191501, gi\|... - gi\|91223415\|ref\|ZP_01258680.1\| hypothetical protein V12G01_22153 [Vibrio alginolyticus 12G01], gi\|91...	194.0	[0..8]	[135..16]
gi\|90021067, gi\|... - gi\|90021067\|ref\|YP_526894.1\| cysteine desulfuration protein SufE [Saccharophagus degradans 2-40], gi...	193.0	[0..8]	[134..17]
gi\|88777331, gi\|... - gi\|88799900\|ref\|ZP_01115472.1\| Cysteine desulfurase SufE subunit [Reinekea sp. MED297], gi\|88777331\|...	193.0	[0..6]	[136..10]
gi\|14027113, gi\|... - gi\|14027113\|dbj\|BAB54067.1\| mll7646 [Mesorhizobium loti MAFF303099], gi\|13476352\|ref\|NP_107922.1\| hy...	193.0	[0..3]	[134..1]
gi\|25307099, gi\|... - pir\|\|AG2689 conserved hypothetical protein Atu0919 [imported] - Agrobacterium tumefaciens (strain C5... gi\|15888257, gi\|... - gi\|17934827\|ref\|NP_531617.1\| hypothetical protein Atu0919 [Agrobacterium tumefaciens str. C58], gi\|1...	193.0	[0..5]	[139..2]
gi\|83594804, gi\|... - gi\|83594804\|ref\|YP_428556.1\| cysteine desulfuration protein SufE [Rhodospirillum rubrum ATCC 11170],...	193.0	[0..3]	[136..4]
gi\|28807365 - gi\|28807365\|dbj\|BAC60630.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28899141, gi\|... - gi\|28899141\|ref\|NP_798746.1\| hypothetical protein VP2367 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	192.0	[0..8]	[135..16]
gi\|75856139, gi\|... - gi\|75856139\|ref\|ZP_00763773.1\| COG2166: SufE protein probably involved in Fe-S center assembly [Vibr...	192.0	[0..8]	[135..16]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XALLPDKEKL LRNFLRCANW EEKYLYIIEL GQRLPELRDE DRSPQNSIQG CQSQVWIVXR  60
   61 QNAQGIIELQ GDSDAAIVKG LIAVVFILYD QXTPQDIVNF DVRPWFEKXA LTQHLTPSRS 120
  121 QGLEAXIRAI RAKAAALSLE HHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1mzgA
Description:	SufE (YhnA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: