YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27574045, gi\|...
Organism:	Escherichia coli
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27574045, gi|....

Description	E-value	Query Range	Subject Range
gi\|166857129, gi... - gi\|76795368\|ref\|ZP_00777741.1\| Periplasmic binding protein [Thermoanaerobacter ethanolicus ATCC 3322... gi\|241903823, gi... - gi\|241903823\|ref\|ZP_04788540.1\| periplasmic binding protein [Thermoanaerobacter brockii subsp. finni...	241.0	[0..2]	[242..64]
gi\|114843388, gi... - gi\|167038963\|ref\|YP_001661948.1\| periplasmic binding protein [Thermoanaerobacter sp. X514], gi\|16685...	238.0	[0..2]	[242..64]
gi\|20806884 - gi\|20806884\|ref\|NP_622055.1\| ABC-type Fe3+-siderophores transport systems, periplasmic components [T... gi\|20806884, gi\|... - gi\|20806884\|ref\|NP_622055.1\| ABC-type Fe3+-siderophores transport systems, periplasmic components [T...	233.0	[0..2]	[242..76]
gi\|110613761, gi... - gi\|110804213\|ref\|YP_687733.1\| vitamin B12-transporter protein BtuF [Shigella flexneri 5 str. 8401], ...	223.0	[0..1]	[245..31]
gi\|194418380, gi... - gi\|83569739\|ref\|ZP_00921189.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp...	223.0	[0..1]	[245..22]
gi\|85721163, gi\|... - gi\|85858072\|ref\|YP_460274.1\| ABC-type transporter cobalamide binding protein [Syntrophus aciditrophi...	223.0	[0..2]	[242..48]
gi\|238719016, gi... - gi\|77962812\|ref\|ZP_00826628.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp...	223.0	[0..1]	[244..39]
EG12334 - vitamin B12 ABC transporter periplasmic binding protein / Vitamin B12 periplasmic binding protein gi\|124499773, gi... - gi\|124529617\|ref\|ZP_01700561.1\| periplasmic binding protein [Escherichia coli B], gi\|124499773\|gb\|EA... gi\|218552739, gi... - gi\|218552739\|ref\|YP_002385652.1\| vitamin B12-transporter protein BtuF [Escherichia coli IAI1], gi\|21... BTUF_ECOLI - Vitamin B12-binding protein precursor - Escherichia coli gi\|209917350, gi... - gi\|209917350\|ref\|YP_002291434.1\| vitamin B12-transporter protein BtuF [Escherichia coli SE11], gi\|20... gi\|218350356, gi... - gi\|218693624\|ref\|YP_002401291.1\| vitamin B12-transporter protein BtuF [Escherichia coli 55989], gi\|2... gi\|238899557, gi... - gi\|238899557\|ref\|YP_002925353.1\| vitamin B12 transporter subunit: periplasmic-binding component of A... EG12334 - vitamin B12 ABC transporter periplasmic binding protein / Vitamin B12 periplasmic binding protein gi\|75210483, gi\|... - gi\|75210483\|ref\|ZP_00710634.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp... gi\|75230479, gi\|... - gi\|75230479\|ref\|ZP_00716960.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp... gi\|157157282, gi... - gi\|75189255\|ref\|ZP_00702522.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp... gi\|157065305, gi... - gi\|75194370\|ref\|ZP_00704440.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp... gi\|74310779, gi\|... - gi\|74310779\|ref\|YP_309198.1\| vitamin B12-transporter protein BtuF [Shigella sonnei Ss046], gi\|738542... gi\|170021488, gi... - gi\|170021488\|ref\|YP_001726442.1\| vitamin B12-transporter protein BtuF [Escherichia coli ATCC 8739], ... gi\|89107039, gi\|... - gi\|89107039\|ref\|AP_000819.1\| vitamin B12 transporter subunit [Escherichia coli str. K-12 substr. W31... gi\|192959096, gi... - gi\|75238863\|ref\|ZP_00722845.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp... gi\|170518756, gi... - gi\|170681038\|ref\|YP_001742287.1\| cobalamin ABC transporter, periplasmic cobalamin-binding protein [E... gi\|192931202, gi... - gi\|75258851\|ref\|ZP_00730241.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp... gi\|169887630, gi... - gi\|170079795\|ref\|YP_001729115.1\| periplasmic binding component of cobalamin (vitamin B-12) transport...	222.0	[0..1]	[245..22]
gi\|194421948, gi... - gi\|83585475\|ref\|ZP_00924120.1\| COG0614: ABC-type Fe3+-hydroxamate transport system, periplasmic comp...	222.0	[0..1]	[245..22]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPRVITLSP ANTELAFAAG ITPVGVSSYS DYPPQAQKIE QVSTWQGMNL ERIVALKPDL  60
   61 VIAWRGGNAE RQVDQLASLG IKVMWVDATS IEQIANALRQ LAPWSPQPDK AEQAAQSLLD 120
  121 QYAQLKAQYA DKPKKRVFLQ FGINPPFTSG KESIQNQVLE VCGGENIFKD SRVPWPQVSR 180
  181 EQVLARSPQA IVITGGPDQI PKIKQYWGEQ LKIPVIPLTS DWFERASPRI ILAAQQLCNA 240
  241 LSQVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1n2zA
Description:	Vitamin B12 binding protein BtuF
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits