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View Structure Prediction Details

Protein: gi|42794937, gi|...
Organism: Arabidopsis thaliana
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42794937, gi|....

Description E-value Query
Range
Subject
Range
gi|26449459, gi|... - gi|28372932|gb|AAO39948.1| At1g29810 [Arabidopsis thaliana], gi|26449459|dbj|BAC41856.1| unknown pro...
282.0 [0..1] [187..1]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLLLPKLF SISRTQVPAA SLFNNLYRRH KRFVHWTSKM STDSVRSSTT GGSASGARTF  60
   61 CSLADLSTKK CVPCNAKDLR AMTEQSAQDL LQKVAGWDLA NDNDTLKLHR SWRVKSFTKG 120
  121 LDFFQRVADI AESEGHHPDL HLVGWNNVKI EIWTHAIGGL TENDFILAAK INELQVEDLL 180
  181 RKKKVAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.39794
Match: 1ru0A
Description: Crystal structure of DCoH2, a paralog of DCoH, the Dimerization Cofactor of HNF-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
4-alpha-hydroxytetrahydrobiopterin dehydratase activity 6.37440350862152 bayes_pls_golite062009
carbon-oxygen lyase activity 2.59083795856045 bayes_pls_golite062009
hydro-lyase activity 2.49246983898572 bayes_pls_golite062009
catalytic activity 1.77011790035856 bayes_pls_golite062009
lyase activity 0.381803429978296 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle