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View Structure Prediction Details

Protein: gi|63003832, gi|...
Organism: Arabidopsis thaliana
Length: 580 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|63003832, gi|....

Description E-value Query
Range
Subject
Range
gi|47077006 - gi|47077006|dbj|BAD18437.1| unnamed protein product [Homo sapiens]
339.0 [0..1] [576..1]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKILCKSTT SSTPVLSTPV NSLAAGFISL GFKTPVKNLP PCSTTKPLST CFFSTSAMPT  60
   61 TTASVSSGGV GFSAYLQRTV HKPAPASVRF STAGYRTCRC SIDGTNRAWV GRTGSWRALF 120
  121 CSDSTGGLTP VNATAGAVVE SEEESDGEDE DEEKDEKPVR MNRRNRSSSG SGEFVGNPDL 180
  181 LKIPGVGLRN QRKLVDNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-580]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGDVAELKKL YKDKFWKASQ KMVDYLRSSV GIIHRNHAES ITTFIKESVD DELKDSGPEP  60
   61 NLNVKKRLTF CVEGNISVGK STFLQRIANE TVELQDLVEI VPEPVDKWQD VGPDHFNILD 120
  121 AFYSEPQRYA YTFQNYVFVT RLMQEKESAS GVKPLRLMER SVFSDRMVFV RAVHEAKWMN 180
  181 EMEISIYDSW FDPVVSSLPG LVPDGFIYLR ASPDTCHKRM MLRKRAEEGG VSLKYLQDLH 240
  241 EKHESWLLPF ESGNHGVLSV SRPSLHMDNS LHPDIKDRVF YLEGNHMHSS IQKVPALVLD 300
  301 CEPNIDFSRD IEAKTQYARQ VAEFFEFVKK KQETSTEKSN SQSPVLLPHQ NGGLWMGPAG 360
  361 NHVPGLDLPP LDLKSLLTRP SA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.0
Match: 2a2zA
Description: Crystal Structure of human deoxycytidine kinase in complex with deoxycytidine and uridine diphosphate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle