Protein: | gi|42563136, gi|... |
Organism: | Arabidopsis thaliana |
Length: | 597 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42563136, gi|....
Description | E-value | Query Range |
Subject Range |
|
610.0 | [0..1] | [593..1] |
|
607.0 | [0..1] | [597..100] |
|
598.0 | [0..1] | [597..1] |
|
594.0 | [0..1] | [597..1] |
|
593.0 | [0..1] | [597..1] |
|
589.0 | [0..1] | [597..1] |
Region A: Residues: [1-182] |
1 11 21 31 41 51 | | | | | | 1 MFKKAVEAKS HQRLSGADRK KLRRTVRNRL PLLTDELLDA ILPPKVEITL SKFQNRVIVY 60 61 SIEGGCPMFF DIDGRGTEIF PTVFALWEAP EMLPSFMLKG GEVSRYIIGG ADLMFPGILI 120 121 PPQGYPSFSA GEIWAVKVPG NLAPIAVGCT TMSSEEARKA GLRGKALRIT HYYRDFLWES 180 181 AE |
Detection Method: | |
Confidence: | 32.0 |
Match: | 2ausC |
Description: | No description for 2ausC was found. |
Region A: Residues: [183-312] |
1 11 21 31 41 51 | | | | | | 1 GHYVPNAGFM EDVVMEDPSY LAPGSGEDIL DTSASTGNEE DESALETAST SAADAKNDAE 60 61 VHVVGSMNEL YLVDDVCATE TNTDKQITLS PEEVDTLLDQ CLLQALHTTL KEKDLPIPGS 120 121 TLWANHVLPC |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [313-402] |
1 11 21 31 41 51 | | | | | | 1 RPSGLTLDIK KSSHKKLSKW LQSKASGGMI SVKEDKHKKE IVLISVNRSH PDYKSFKPEK 60 61 KKAEVSESPG ERSTAQAQSE KGLEIIEVYK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [403-489] |
1 11 21 31 41 51 | | | | | | 1 SSIHNSAIFA SVGEDKGNLY TASEATDVVF KYIEKENLVK PTNKSMVVLD PILCDALFKG 60 61 AIKKGSAYPS EIHKKDVGST FVGRMQP |
Detection Method: | |
Confidence: | 4.221849 |
Match: | 1v32A |
Description: | Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [490-597] |
1 11 21 31 41 51 | | | | | | 1 NHVVMRGGGE PVVRKGAVKP VQIMTERRQG NKKVTKVTGM ETFLIDPDSF GSELQKKFAC 60 61 STSVGELPGK KGYEVLIQGG VIDNLARYMV EHYGVPKRYI EVLDKTRK |
Detection Method: | |
Confidence: | 27.221849 |
Match: | 2if1A |
Description: | HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES |
Matching Structure (courtesy of the PDB): |