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View Structure Prediction Details

Protein: LHTL3_ARATH
Organism: Arabidopsis thaliana
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHTL3_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
236.0 [0..3] [411..937]

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Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIPSSSNQ ILNQDLVEDQ SFELEDWLPI TASRNANWYY SAFHNVTAIV GAGVLGLPYA  60
   61 MSELGWGPGV VVLILSWVIT LYTFWQMIEM HEMFEGKRFD RYHELGQAAF GKKLGLYIVV 120
  121 PLQLLVETSA CIVYMVTGGE SLKKIHQLSV GDYECRKLKV RHFILIFASS QFVLSLLKNF 180
  181 NSISGVSLVA AVMSMSYSTI AWVASLTKGV ANNVEYGYKR RNNTSVPLAF LGALGEMAFA 240
  241 YAGHNVVLEI QATIPSTPEN PSKRPMWKGA IVAYIIVAFC YFPVALVGFW TFGNNVEENI 300
  301 LKTLRGPKGL IIVANIFVII HLMGSYQVYA MPVFDMIESV MIKKWHFSPT RVLRFTIRWT 360
  361 FVAATMGIAV ALPHFSALLS FFGGFIFAPT TYFIPCIIWL ILKKPKRFSL SWCINWICII 420
  421 LGVLVMIIAP IGGLAKLMNA LKQPDSSCKS T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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